Strain identifier

BacDive ID: 17414

Type strain: Yes

Species: Labrys wisconsinensis

Strain Designation: W1215-PCA-4

Strain history: <- R. A. Albert, Kleen Test Products, Port Washington, USA; W1215-PCA-4

NCBI tax ID(s): 425677 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8211

BacDive-ID: 17414

DSM-Number: 19619

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Labrys wisconsinensis W1215-PCA-4 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from Water sample.

NCBI tax id

  • NCBI tax id: 425677
  • Matching level: species

strain history

  • @ref: 8211
  • history: <- R. A. Albert, Kleen Test Products, Port Washington, USA; W1215-PCA-4

doi: 10.13145/bacdive17414.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Xanthobacteraceae
  • genus: Labrys
  • species: Labrys wisconsinensis
  • full scientific name: Labrys wisconsinensis Albert et al. 2010

@ref: 8211

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Xanthobacteraceae

genus: Labrys

species: Labrys wisconsinensis

full scientific name: Labrys wisconsinensis Albert et al. 2010

strain designation: W1215-PCA-4

type strain: yes

Morphology

cell morphology

  • @ref: 29527
  • gram stain: negative
  • cell length: 02-03 µm
  • cell width: 1-1.5 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 29527
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 8211
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8211positivegrowth28mesophilic
29527positivegrowth10-40
29527positiveoptimum25mesophilic

culture pH

@refabilitytypepH
29527positivegrowth7
29527positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29527
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
29527NaClpositivegrowth0-1.2 %
29527NaClpositiveoptimum0-1.2 %

observation

  • @ref: 29527
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2952722599arabinose+carbon source
2952717057cellobiose+carbon source
2952728757fructose+carbon source
2952733942ribose+carbon source
2952717992sucrose+carbon source
2952718222xylose+carbon source

enzymes

@refvalueactivityec
29527catalase+1.11.1.6
29527cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 8211
  • sample type: Water sample
  • geographic location: Wisconsin, Lake Michigan
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_97040.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_31145;97_39387;98_51236;99_97040&stattab=map
  • Last taxonomy: Labrys wisconsinensis subclade
  • 16S sequence: EF382666
  • Sequence Identity:
  • Total samples: 998
  • soil counts: 557
  • aquatic counts: 49
  • animal counts: 243
  • plant counts: 149

Safety information

risk assessment

  • @ref: 8211
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8211
  • description: Labrys wisconsinensis strain W1215-PCA4 16S ribosomal RNA gene, partial sequence
  • accession: EF382666
  • length: 1481
  • database: ena
  • NCBI tax ID: 425677

Genome sequences

  • @ref: 66792
  • description: Labrys wisconsinensis DSM 19619
  • accession: 2928284429
  • assembly level: draft
  • database: img
  • NCBI tax ID: 425677

External links

@ref: 8211

culture collection no.: DSM 19619, NRRL B-51088

straininfo link

  • @ref: 86410
  • straininfo: 408334

literature

  • topic: Phylogeny
  • Pubmed-ID: 19684322
  • title: Labrys wisconsinensis sp. nov., a budding bacterium isolated from Lake Michigan water, and emended description of the genus Labrys.
  • authors: Albert RA, Waas NE, Langer S, Pavlons SC, Feldner JL, Rossello-Mora R, Busse HJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.014977-0
  • year: 2009
  • mesh: Alphaproteobacteria/*classification/genetics/isolation & purification/physiology, Base Sequence, Fresh Water/*microbiology, Lipids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8211Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19619)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19619
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29527Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2592428776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86410Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID408334.1StrainInfo: A central database for resolving microbial strain identifiers