Strain identifier
BacDive ID: 17414
Type strain:
Species: Labrys wisconsinensis
Strain Designation: W1215-PCA-4
Strain history: <- R. A. Albert, Kleen Test Products, Port Washington, USA; W1215-PCA-4
NCBI tax ID(s): 425677 (species)
General
@ref: 8211
BacDive-ID: 17414
DSM-Number: 19619
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Labrys wisconsinensis W1215-PCA-4 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from Water sample.
NCBI tax id
- NCBI tax id: 425677
- Matching level: species
strain history
- @ref: 8211
- history: <- R. A. Albert, Kleen Test Products, Port Washington, USA; W1215-PCA-4
doi: 10.13145/bacdive17414.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Xanthobacteraceae
- genus: Labrys
- species: Labrys wisconsinensis
- full scientific name: Labrys wisconsinensis Albert et al. 2010
@ref: 8211
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Xanthobacteraceae
genus: Labrys
species: Labrys wisconsinensis
full scientific name: Labrys wisconsinensis Albert et al. 2010
strain designation: W1215-PCA-4
type strain: yes
Morphology
cell morphology
- @ref: 29527
- gram stain: negative
- cell length: 02-03 µm
- cell width: 1-1.5 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 29527
- production: yes
Culture and growth conditions
culture medium
- @ref: 8211
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8211 | positive | growth | 28 | mesophilic |
29527 | positive | growth | 10-40 | |
29527 | positive | optimum | 25 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
29527 | positive | growth | 7 |
29527 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 29527
- oxygen tolerance: facultative anaerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
29527 | NaCl | positive | growth | 0-1.2 % |
29527 | NaCl | positive | optimum | 0-1.2 % |
observation
- @ref: 29527
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29527 | 22599 | arabinose | + | carbon source |
29527 | 17057 | cellobiose | + | carbon source |
29527 | 28757 | fructose | + | carbon source |
29527 | 33942 | ribose | + | carbon source |
29527 | 17992 | sucrose | + | carbon source |
29527 | 18222 | xylose | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
29527 | catalase | + | 1.11.1.6 |
29527 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 8211
- sample type: Water sample
- geographic location: Wisconsin, Lake Michigan
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
taxonmaps
- @ref: 69479
- File name: preview.99_97040.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_31145;97_39387;98_51236;99_97040&stattab=map
- Last taxonomy: Labrys wisconsinensis subclade
- 16S sequence: EF382666
- Sequence Identity:
- Total samples: 998
- soil counts: 557
- aquatic counts: 49
- animal counts: 243
- plant counts: 149
Safety information
risk assessment
- @ref: 8211
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8211
- description: Labrys wisconsinensis strain W1215-PCA4 16S ribosomal RNA gene, partial sequence
- accession: EF382666
- length: 1481
- database: ena
- NCBI tax ID: 425677
Genome sequences
- @ref: 66792
- description: Labrys wisconsinensis DSM 19619
- accession: 2928284429
- assembly level: draft
- database: img
- NCBI tax ID: 425677
External links
@ref: 8211
culture collection no.: DSM 19619, NRRL B-51088
straininfo link
- @ref: 86410
- straininfo: 408334
literature
- topic: Phylogeny
- Pubmed-ID: 19684322
- title: Labrys wisconsinensis sp. nov., a budding bacterium isolated from Lake Michigan water, and emended description of the genus Labrys.
- authors: Albert RA, Waas NE, Langer S, Pavlons SC, Feldner JL, Rossello-Mora R, Busse HJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.014977-0
- year: 2009
- mesh: Alphaproteobacteria/*classification/genetics/isolation & purification/physiology, Base Sequence, Fresh Water/*microbiology, Lipids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
8211 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19619) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19619 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
29527 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25924 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
86410 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID408334.1 | StrainInfo: A central database for resolving microbial strain identifiers |