Ancylobacter novellus (DSM 506, ATCC 8093, CCM 1077)

Name: Ancylobacter novellus (DSM 506, ATCC 8093, CCM 1077)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17415

Type strain

Culture col. no. DSM 506 ATCC 8093 CCM 1077 IFO 12443 NBRC 12443 8 more

NCBI tax ID(s) 921

Special Collections DSMZ JCM CIP

Links

Ancylobacter novellus DSM 506 is a mesophilic, Gram-negative, rod-shaped prokaryote that was isolated from soil.

Gram-negative rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 45477

ATCC 8093,DSM 506,IFO 12443,CCM 1077,IAM 12100,NCIB 9113,NCIB 10456,CIP 104402,IFO 14993,NCIMB 9113,NCIMB 10456,CIP106821,LMD 38.19,LMD 81.75,KCTC 2845,NCCB 38019,NCCB 81075,NBRC 12443,NBRC 14993,BCRC 13031,CCRC 13031,NCIM 2858,BCRC 17550,CCRC 17550,JCM 20403

@ref 20215

Last LPSN update 2025-12-16 09:51:05

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Xanthobacteraceae

Genus Ancylobacter

Species Ancylobacter novellus

Full scientific name Ancylobacter novellus (Starkey 1934) Doronina et al. 2023

Synonyms (2)

Thiobacillus novellus
Starkeya novella

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438	negative		97.083
125439	negative		95.6
121364	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
253	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
253	STARKEYA NOVELLA MEDIUM (DSMZ Medium 69)	Medium recipe at MediaDive	Name: STARKEYA NOVELLA MEDIUM (DSMZ Medium 69) Composition: Agar 14.9667 g/l (optional) Na2HPO4 x 12 H2O 10.5765 g/l Na2S2O3 x 5 H2O 5.0 g/l KH2PO4 1.49667 g/l NH4Cl 0.299335 g/l Yeast extract 0.299335 g/l Na2-EDTA 0.25 g/l ZnSO4 x 7 H2O 0.11 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.0277 g/l MnCl2 x 4 H2O 0.0253 g/l FeSO4 x 7 H2O 0.025 g/l CoCl2 x 6 H2O 0.00805 g/l CuSO4 x 5 H2O 0.00785 g/l (NH4)6Mo7O24 x 4 H2O 0.0055 g/l Phenol red 0.0018 g/l Distilled water
36058	MEDIUM 127 - for Streptomyces scabiei and Thiobacillus novellus		Distilled water make up to (1000.000 ml);Magnesium sulphate heptahydrate (0.100 g);Agar (15.000 g);Yeast extract (5.000 g);Potassium di-hydrogen phosphate (1.500 g);Ammonium chloride (0.300 g);Sodium thiosulphate pentahydrate (5.000 g);Di Sodium hydrogen
121364	CIP Medium 127	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
253	positive	growth	28	mesophilic
36058	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
121364	positive	growth	37	mesophilic
121364	negative	growth	10
121364	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.3

Spore formation

@ref	Spore formation	Confidence
125439		97.6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
121364	17632 ChEBI	nitrate	-	reduction
121364	16301 ChEBI	nitrite	+	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121364	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
121364	alcohol dehydrogenase	-	1.1.1.1
121364	catalase	-	1.11.1.6
121364	lysine decarboxylase	-	4.1.1.18
121364	ornithine decarboxylase	-	4.1.1.17
121364	oxidase	-
121364	urease	-	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ppGpp biosynthesis	100	4 of 4
66794	glycogen metabolism	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	Entner Doudoroff pathway	100	10 of 10
66794	cardiolipin biosynthesis	100	7 of 7
66794	methanofuran biosynthesis	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	enterobactin biosynthesis	100	3 of 3
66794	photosynthesis	100	14 of 14
66794	palmitate biosynthesis	100	22 of 22
66794	propanol degradation	100	7 of 7
66794	L-lactaldehyde degradation	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	starch degradation	100	10 of 10
66794	ketogluconate metabolism	100	8 of 8
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	propionate fermentation	100	10 of 10
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	methane metabolism	100	3 of 3
66794	denitrification	100	2 of 2
66794	lactate fermentation	100	4 of 4
66794	creatinine degradation	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	CO2 fixation in Crenarchaeota	100	9 of 9
66794	sulfopterin metabolism	100	4 of 4
66794	citric acid cycle	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	vitamin B12 metabolism	91.18	31 of 34
66794	proline metabolism	90.91	10 of 11
66794	pentose phosphate pathway	90.91	10 of 11
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	NAD metabolism	83.33	15 of 18
66794	vitamin B6 metabolism	81.82	9 of 11
66794	vitamin K metabolism	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	phenol degradation	80	16 of 20
66794	4-hydroxyphenylacetate degradation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	gallate degradation	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	alanine metabolism	79.31	23 of 29
66794	glutathione metabolism	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	tryptophan metabolism	76.32	29 of 38
66794	histidine metabolism	75.86	22 of 29
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	degradation of sugar alcohols	75	12 of 16
66794	degradation of aromatic, nitrogen containing compounds	75	9 of 12
66794	CMP-KDO biosynthesis	75	3 of 4
66794	oxidative phosphorylation	74.73	68 of 91
66794	purine metabolism	73.4	69 of 94
66794	d-xylose degradation	72.73	8 of 11
66794	metabolism of disaccharids	72.73	8 of 11
66794	degradation of sugar acids	72	18 of 25
66794	heme metabolism	71.43	10 of 14
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	degradation of pentoses	71.43	20 of 28
66794	arginine metabolism	70.83	17 of 24
66794	methionine metabolism	69.23	18 of 26
66794	urea cycle	69.23	9 of 13
66794	lipid metabolism	67.74	21 of 31
66794	3-phenylpropionate degradation	66.67	10 of 15
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	sulfoquinovose degradation	66.67	2 of 3
66794	methanogenesis from CO2	66.67	8 of 12
66794	pyrimidine metabolism	66.67	30 of 45
66794	lysine metabolism	66.67	28 of 42
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	tyrosine metabolism	64.29	9 of 14
66794	non-pathway related	63.16	24 of 38
66794	sulfate reduction	61.54	8 of 13
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	lipoate biosynthesis	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	ascorbate metabolism	59.09	13 of 22
66794	nitrate assimilation	55.56	5 of 9
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	ribulose monophosphate pathway	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	androgen and estrogen metabolism	50	8 of 16
66794	glycine metabolism	50	5 of 10
66794	toluene degradation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	kanosamine biosynthesis II	50	1 of 2
66794	hydrogen production	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	D-cycloserine biosynthesis	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	carnitine metabolism	37.5	3 of 8
66794	bile acid biosynthesis, neutral pathway	35.29	6 of 17
66794	IAA biosynthesis	33.33	1 of 3
66794	arachidonic acid metabolism	33.33	6 of 18
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	alginate biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	carotenoid biosynthesis	22.73	5 of 22

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121364	not determinedn.d.	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	-	-	-	+	-	+	-	-	+	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	+	-	+	-	-	-	-	-	-	+	-	-	-	-	-	+	-	-	+	-	+	-	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type
253	soil
121364	Environment, Soil

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
253	1	Risk group (German classification) According to TRBA 466
121364	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM9292v1 assembly for Ancylobacter novellus DSM 506	complete	GCA_000092925	639283.3	648028054	639283	99.38

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Starkeya novella gene for 16S rRNA, strain: IAM 12100	D32247	1407		639283

GC content

@ref	GC-content (mol%)	Method
253	68.0	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Starkeya novella DSM 506
NCBI: GCA_000092925

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.60	no
125439	motility	BacteriaNetⓘ	yes	57.60	no
125439	gram_stain	BacteriaNetⓘ	negative	95.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Starkeya novella DSM 506 DSM 506
NCBI: GCA_000092925.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.08	no
125438	anaerobic	anaerobicⓘ	no	91.71	no
125438	aerobic	aerobicⓘ	yes	84.82	no
125438	spore-forming	spore-formingⓘ	no	87.33	no
125438	thermophilic	thermophileⓘ	no	94.92	no
125438	flagellated	motile2+ⓘ	no	58.76	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genetic Diversity and Growth-Promoting Functions of Endophytic Nitrogen-Fixing Bacteria in Apple.	Liu H, Cheng H, Xu S, Zhang D, Wu J, Li Z, Fu B, Liu L.	Plants (Basel)	10.3390/plants14081235	2025
	Engineering a vanillate-producing strain of Pseudomonas sp. NGC7 corresponding to aromatic compounds derived from the continuous catalytic alkaline oxidation of sulfite lignin.	Kamada M, Yasuta C, Higuchi Y, Yoshida A, Kurnia I, Sakamoto C, Takeuchi A, Osaka Y, Muraki K, Kamimura N, Masai E, Sonoki T.	Microb Cell Fact	10.1186/s12934-024-02590-z	2024
Cultivation	Key internal factors leading to the variability in CO2 fixation efficiency of different sulfur-oxidizing bacteria during autotrophic cultivation.	Wang YN, Kai Y, Wang L, Tsang YF, Fu X, Hu J, Xie Y	J Environ Manage	10.1016/j.jenvman.2020.110957	2020
Metabolism	Response of cbb gene transcription levels of four typical sulfur-oxidizing bacteria to the CO2 concentration and its effect on their carbon fixation efficiency during sulfur oxidation.	Wang YN, Wang L, Tsang YF, Fu X, Hu J, Li H, Le Y	Enzyme Microb Technol	10.1016/j.enzmictec.2016.06.015	2016
Phylogeny	Proposal for the reclassification of Thiobacillus novellus as Starkeya novella gen. nov., comb. nov., in the alpha-subclass of the Proteobacteria.	Kelly DP, McDonald IR, Wood AP	Int J Syst Evol Microbiol	10.1099/00207713-50-5-1797	2000
Genetics	Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)).	Kappler U, Davenport K, Beatson S, Lucas S, Lapidus A, Copeland A, Berry KW, Glavina Del Rio T, Hammon N, Dalin E, Tice H, Pitluck S, Richardson P, Bruce D, Goodwin LA, Han C, Tapia R, Detter JC, Chang YJ, Jeffries CD, Land M, Hauser L, Kyrpides NC, Goker M, Ivanova N, Klenk HP, Woyke T	Stand Genomic Sci	10.4056/sigs.3006378	2012
Enzymology	Purification and characterization of the phosphoenolpyruvate carboxylase from the facultative chemolithotroph Thiobacillus novellus (ATCC 8093).	Charles AM, Sykora Y	Antonie Van Leeuwenhoek	10.1007/BF00582575	1992
Phylogeny	Starkeya koreensis sp. nov., isolated from rice straw.	Im WT, Aslam Z, Lee M, Ten LN, Yang DC, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64093-0	2006
Phylogeny	Ancylobacter moscoviensis sp. nov., novel facultatively methylotrophic bacteria from activated sludge and the reclassification of Starkeya novella (Starkey 1934) Kelly et al. 2000 as Ancylobacter novellus comb. nov., Starkeya koreensis Im et al. 2006 as Ancylobacter koreensis comb.nov., Angulomicrobium tetraedrale Vasil'eva et al. 1986 as Ancylobacter tetraedralis comb. nov., Angulomicrobium amanitiforme Fritz et al. 2004 as Ancylobacter amanitiformis comb. nov., and Methylorhabdus multivorans Doronina et al. 1996 as Ancylobacter multivorans comb. nov., and emended description of the genus Ancylobacter.	Doronina NV, Chemodurova AA, Grouzdev DS, Koziaeva VV, Agafonova NV, Shi W, Wu L, Kaparullina EN	Antonie Van Leeuwenhoek	10.1007/s10482-022-01788-8	2022

References

#253	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 506
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36058	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#121364	Collection of Institut Pasteur ; Curators of the CIP; CIP 104402
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ancylobacter novellus (DSM 506, ATCC 8093, CCM 1077)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000092925

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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