Ancylobacter dichloromethanicus (DSM 21507, VKM B-2484, DM16)

Name: Ancylobacter dichloromethanicus (DSM 21507, VKM B-2484, DM16)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17408

Type strain

Strain Designation DM16

Culture col. no. DSM 21507 VKM B-2484 DM16

NCBI tax ID(s) 518825

Special Collections DSMZ

Links

Ancylobacter dichloromethanicus DM16 is a mesophilic prokaryote that was isolated from dichloromethane contaminated soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 401477

VKM B-2484,DSM 21507,CCUG 75079T

@ref 20215

Last LPSN update 2025-12-16 09:51:05

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Xanthobacteraceae

Genus Ancylobacter

Species Ancylobacter dichloromethanicus

Full scientific name Ancylobacter dichloromethanicus Firsova et al. 2010

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15752	MINERAL MEDIUM WITH VITAMINS (DSMZ Medium 462)		Medium recipe at MediaDive	Name: MINERAL MEDIUM (BRUNNER) WITH VITAMINS (DSMZ Medium 462; with strain-specific modifications) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Casein peptone 15.0 g/l Methanol 5.0 g/l Soy peptone 5.0 g/l NaCl 5.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l Pyridoxamine 0.000125 g/l ZnSO4 x 7 H2O 0.0001 g/l Nicotinic acid 5e-05 g/l Vitamin B12 5e-05 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l Thiamine-HCl x 2 H2O 2.5e-05 g/l p-Aminobenzoate 2.5e-05 g/l NiCl2 x 6 H2O 2e-05 g/l Calcium pantothenate 1.25e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Biotin 5e-06 g/l Distilled water
15752	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15752	positive	growth	28	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15752	dichloromethane contaminated soil	Volgograd	Russia	RUS	Europe

Taxonmaps

69479

Global distribution of 16S sequence EU589386 (>99% sequence identity) for Ancylobacter from Microbeatlas

Aquatic Samples	2318
Soil Samples	1085
Animal Samples	1936
Plant Samples	762
Total Samples	6101

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15752	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM4266064v1 assembly for Ancylobacter dichloromethanicus VKM B-2484	contig	GCA_042660645			518825	72.86
124043	ASM2792228v1 assembly for Ancylobacter dichloromethanicus VKM B-2484	scaffold	GCA_027922285	518825.4	8118839366	518825	61.67
124043	ASM1839064v1 assembly for Ancylobacter dichloromethanicus VKM B-2484	scaffold	GCA_018390645	518825.3	8001840407	518825	61.59
124043	ASM4268228v1 assembly for Ancylobacter dichloromethanicus VKM B-2484	contig	GCA_042682285			518825	7.6

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15752	Ancylobacter dichloromethanicus strain DM16 16S ribosomal RNA gene, partial sequence	EU589386	1393		518825

GC content

@ref	GC-content (mol%)	Method
15752	64.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Isolation and identification of sodium fluoroacetate degrading bacteria from caprine rumen in Brazil.	Camboim EK, Almeida AP, Tadra-Sfeir MZ, Junior FG, Andrade PP, McSweeney CS, Melo MA, Riet-Correa F.	ScientificWorldJournal	10.1100/2012/178254	2012
Metabolism	Defluorination of sodium fluoroacetate by bacteria from soil and plants in Brazil.	Camboim EK, Tadra-Sfeir MZ, de Souza EM, Pedrosa Fde O, Andrade PP, McSweeney CS, Riet-Correa F, Melo MA.	ScientificWorldJournal	10.1100/2012/149893	2012
	Paving the Way for a Green Transition in the Design of Sensors and Biosensors for the Detection of Volatile Organic Compounds (VOCs).	Cova CM, Rincon E, Espinosa E, Serrano L, Zuliani A.	Biosensors (Basel)	10.3390/bios12020051	2022
Phylogeny	Ancylobacter pratisalsi sp. nov. with plant growth promotion abilities from the rhizosphere of Plantago winteri Wirtg.	Suarez C, Ratering S, Schafer J, Schnell S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002320	2017
Phylogeny	Ancylobacter dichloromethanicus sp. nov.--a new aerobic facultatively methylotrophic bacterium utilizing dichloromethane.	Firsova J, Doronina N, Lang E, Sproer C, Vuilleumier S, Trotsenko Y	Syst Appl Microbiol	10.1016/j.syapm.2009.02.002	2009

References

#15752	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21507
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ancylobacter dichloromethanicus (DSM 21507, VKM B-2484, DM16)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042660645

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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