Name: Ancylobacter dichloromethanicus DM16
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17408

Type strain:

Species: Ancylobacter dichloromethanicus

Strain Designation: DM16

Culture col. no.: DSM 21507, VKM B-2484

Strain history: <- Y. A. Trotsenko, IBFM - Inst. Biochem. Physiol. Microorg., Pushchino, Russia; DM16 <- J.E. Firsova

NCBI tax ID(s): 518825 (species)

SI-ID 401477

DSM 21507

Special Collections

DSMZ

Section

Ancylobacter dichloromethanicus DM16 is a bacterium that was isolated from dichloromethane contaminated soil.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Xanthobacteraceae*
	Genus	*Ancylobacter*
	Species	**Ancylobacter dichloromethanicus**
	Full Scientific Name (LPSN)	Ancylobacter dichloromethanicus Firsova et al. 2010

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15752]

Culture medium

MINERAL MEDIUM WITH VITAMINS (DSMZ Medium 462)

[Ref.: #15752]

Culture medium growth

[Ref.: #15752]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15752]

Culture medium composition

expand / minimize

[Ref.: #15752]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #15752]

Culture medium growth

[Ref.: #15752]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15752]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15752]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15752]	Sample type/isolated from	dichloromethane contaminated soil
[Ref.: #15752]	Geographic location (country and/or sea, region)	Volgograd
[Ref.: #15752]	Country	Russia
[Ref.: #15752]	Country ISO 3 Code	RUS
[Ref.: #15752]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU589386 (>99% sequence identity) for Ancylobacter from Microbeatlas

Aquatic Samples	2318
Soil Samples	1085
Animal Samples	1936
Plant Samples	762
Total Samples	6101

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15752]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15752]	Ancylobacter dichloromethanicus strain DM16 16S ribosomal RNA gene, partial sequence	EU589386	1393	GenBank ENA	518825 tax ID

[Ref.: #15752]

GC-content

64.5 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #15752]

Culture collection no.

DSM 21507, VKM B-2484

[Ref.: #86406]

SI-ID 401477

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ancylobacter pratisalsi sp. nov. with plant growth promotion abilities from the rhizosphere of Plantago winteri Wirtg.	Suarez C, Ratering S, Schafer J, Schnell S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002320	2017	*
Phylogeny	Ancylobacter dichloromethanicus sp. nov.--a new aerobic facultatively methylotrophic bacterium utilizing dichloromethane.	Firsova J, Doronina N, Lang E, Sproer C, Vuilleumier S, Trotsenko Y	Syst Appl Microbiol	10.1016/j.syapm.2009.02.002	2009	*

References

#15752

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21507

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86406

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401477.1 )

* These data were automatically processed and therefore are not curated

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