Name: Labrys monacha DSM 5896
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17409

Type strain:

Species: Labrys monacha

Culture col. no.: DSM 5896, ATCC 43932, BKM B-1479, VKM B-1479, JCM 21795, IAM 15350

Strain history: IAM 15350 <-- DSM 5896 <-- VKM B-1479.

NCBI tax ID(s): 217067 (species)

Section

Labrys monacha DSM 5896 is a mesophilic bacterium that was isolated from silt.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Xanthobacteraceae*
	Genus	*Labrys*
	Species	**Labrys monacha**
	Full Scientific Name (LPSN)	Labrys monacha corrig. Vasilyeva and Semenov 1985

	Synonym	Labrys monahos
	Synonym	Labrys monachus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2153]

Culture medium

MMB MEDIUM (DSMZ Medium 628)

[Ref.: #2153]

Culture medium growth

[Ref.: #2153]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2153]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2153]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #2153]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2153]	Sample type/isolated from	silt
[Ref.: #2153]	Geographic location (country and/or sea, region)	Lake Mustijary
[Ref.: #2153]	Country	Estonia
[Ref.: #2153]	Country ISO 3 Code	EST
[Ref.: #2153]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Silt of Lake Mustijärv
[Ref.: #67770]	Country	Estonia
[Ref.: #67770]	Country ISO 3 Code	EST
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ535707 (>99% sequence identity) for Labrys monachus from Microbeatlas

Aquatic Samples	16
Soil Samples	460
Animal Samples	50
Plant Samples	4
Total Samples	530

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2153]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2153]	Labrys monachus 16S rRNA gene, strain VKM-B1479	AJ535707	1442	ENA	217067 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Labrys monachus DSM 5896	2927548933	draft	JGI IMG/M	217067 tax ID	*

[Ref.: #67770]

GC-content

66.9-68.9 mol%

Availability in culture collections External links

[Ref.: #2153]

Culture collection no.

DSM 5896, ATCC 43932, BKM B-1479, VKM B-1479, JCM 21795, IAM 15350

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenetic relationships of the genera Stella, Labrys and Angulomicrobium within the 'Alphaproteobacteria' and description of Angulomicrobium amanitiforme sp. nov.	Fritz I, Strompl C, Abraham WR	Int J Syst Evol Microbiol	10.1099/ijs.0.02746-0	2004	*
Phylogeny	Labrys soli sp. nov., isolated from the rhizosphere of ginseng.	Nguyen NL, Kim YJ, Hoang VA, Kang JP, Wang C, Zhang J, Kang CH, Yang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000512	2015	*
Phylogeny	Labrys wisconsinensis sp. nov., a budding bacterium isolated from Lake Michigan water, and emended description of the genus Labrys.	Albert RA, Waas NE, Langer S, Pavlons SC, Feldner JL, Rossello-Mora R, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.014977-0	2009	*
Phylogeny	Labrys neptuniae sp. nov., isolated from root nodules of the aquatic legume Neptunia oleracea.	Chou YJ, Elliott GN, James EK, Lin KY, Chou JH, Sheu SY, Sheu DS, Sprent JI, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.64553-0	2007	*
Phylogeny	Labrys okinawensis sp. nov. and Labrys miyagiensis sp. nov., budding bacteria isolated from rhizosphere habitats in Japan, and emended descriptions of the genus Labrys and Labrys monachus.	Islam MS, Kawasaki H, Nakagawa Y, Hattori T, Seki T	Int J Syst Evol Microbiol	10.1099/ijs.0.64239-0	2007	*

References

#2153

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5896

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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