Labrys monacha (DSM 5896, ATCC 43932, BKM B-1479)

Name: Labrys monacha (DSM 5896, ATCC 43932, BKM B-1479)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17409

Type strain

Culture col. no. DSM 5896 ATCC 43932 BKM B-1479 VKM B-1479 IAM 15350 1 more

NCBI tax ID(s) 217067

Special Collections DSMZ JCM

History DSMZ <- VKM JCM <-- IAM 15350 <-- DSM 5896 <-- VKM B-1479.

Links

Labrys monacha DSM 5896 is a bacterium that was isolated from silt.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 45178

ATCC 43932,VKM B-1479,DSM 5896,JCM 21795,IAM 15350

@ref 20215

Last LPSN update 2026-05-29 08:29:00

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Xanthobacteraceae

Genus Labrys

Species Labrys monacha

Full scientific name Labrys monacha corrig. Vasilyeva and Semenov 1985

Synonyms (2)

Labrys monachus
Labrys monahos

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2153	MMB MEDIUM (DSMZ Medium 628)		Medium recipe at MediaDive	Name: MMB MEDIUM (DSMZ Medium 628) Composition: Glucose 1.0 g/l MgSO4 x 7 H2O 0.594 g/l (NH4)2SO4 0.25 g/l Nitrilotriacetic acid 0.2 g/l Yeast extract 0.15 g/l Peptone 0.15 g/l CaCl2 x 2 H2O 0.0667 g/l ZnSO4 x 7 H2O 0.001095 g/l FeSO4 x 7 H2O 0.0005 g/l Na-EDTA 0.00025 g/l (NH4)6Mo7O24 x 4 H2O 0.000185 g/l MnSO4 x H2O 0.000154 g/l Calcium pantothenate 5e-05 g/l Pyridoxine hydrochloride 5e-05 g/l Riboflavin 5e-05 g/l Nicotinamide 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l CuSO4 x 5 H2O 3.92e-05 g/l Co(NO3)2 x 6 H2O 2.48e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l Na2B4O7 x 10 H2O 1.77e-05 g/l Vitamin B12 1e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
2153	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	90.306

Spore formation

@ref	Spore formation	Confidence
125439		98.635

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Mud (Sludge)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2153	silt	Lake Mustijary	Estonia	EST	Europe
67770	Silt of Lake Mustijärv		Estonia	EST	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ535707 (>99% sequence identity) for Labrys monachus from Microbeatlas

Aquatic Samples	16
Soil Samples	460
Animal Samples	50
Plant Samples	4
Total Samples	530

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2153	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3081465v1 assembly for Labrys monachus DSM 5896	contig	GCA_030814655	217067.3	2927548933	217067	73.61

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
2153	Labrys monachus 16S rRNA gene, strain VKM-B1479	AJ535707	1442		217067

GC content

67770

GC-content (mol%)66.9-68.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3081465v1 assembly for Labrys monachus DSM 5896
NCBI: GCA_030814655

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	90.31	no
125439	gram_stain	BacteriaNetⓘ	negative	82.07	no
125439	motility	BacteriaNetⓘ	yes	52.66	no
125439	spore_formation	BacteriaNetⓘ	no	98.64	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenetic relationships of the genera Stella, Labrys and Angulomicrobium within the 'Alphaproteobacteria' and description of Angulomicrobium amanitiforme sp. nov.	Fritz I, Strompl C, Abraham WR	Int J Syst Evol Microbiol	10.1099/ijs.0.02746-0	2004
Phylogeny	Labrys soli sp. nov., isolated from the rhizosphere of ginseng.	Nguyen NL, Kim YJ, Hoang VA, Kang JP, Wang C, Zhang J, Kang CH, Yang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000512	2015
Phylogeny	Labrys wisconsinensis sp. nov., a budding bacterium isolated from Lake Michigan water, and emended description of the genus Labrys.	Albert RA, Waas NE, Langer S, Pavlons SC, Feldner JL, Rossello-Mora R, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.014977-0	2009
Phylogeny	Labrys neptuniae sp. nov., isolated from root nodules of the aquatic legume Neptunia oleracea.	Chou YJ, Elliott GN, James EK, Lin KY, Chou JH, Sheu SY, Sheu DS, Sprent JI, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.64553-0	2007
Phylogeny	Labrys okinawensis sp. nov. and Labrys miyagiensis sp. nov., budding bacteria isolated from rhizosphere habitats in Japan, and emended descriptions of the genus Labrys and Labrys monachus.	Islam MS, Kawasaki H, Nakagawa Y, Hattori T, Seki T	Int J Syst Evol Microbiol	10.1099/ijs.0.64239-0	2007

References

#2153	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5896
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Labrys monacha (DSM 5896, ATCC 43932, BKM B-1479)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030814655

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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