Name: Ancylobacter aquaticus DSM 101
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17385

Type strain:

Species: Ancylobacter aquaticus

Culture col. no.: DSM 101, ATCC 25396, CCM 1786, NCIB 9271, CCUG 30551, JCM 20518, JCM 6888, BUCSAV 410, CCUG 1820, IAM 12364, LMG 4052, NBRC 102453, NCIMB 9271, NCMB 1801, VKM B-1287

Strain history: IAM 12364 <-- ATCC 25396 <-- H. D. Raj Mc-2 <-- D. Claus, Ørskov strain <-- J. Ørskov.

NCBI tax ID(s): 100 (species)

SI-ID 889

LMG 8809, ATCC 25396, CCM 1786, DSM 101, IAM 12364, LMG 4052, NCIMB 9271, NCMB 1801, CCUG 30551, CCUG 1820, NCIB 9271, VKM B-1287, CECT 4166, NCIMB 1801, JCM 6888, NCIM 2119, BCRC 17425, CCRC 17425, NBRC 102453, JCM 20518, CGMCC 1.2804

Special Collections

Other strains from Ancylobacter aquaticus

Section

Ancylobacter aquaticus DSM 101 is a Gram-negative bacterium that was isolated from lake water.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Xanthobacteraceae*
	Genus	*Ancylobacter*
	Species	**Ancylobacter aquaticus**
	Full Scientific Name (LPSN)	Ancylobacter aquaticus (Ørskov 1928) Raj 1983

Synonym

Microcyclus aquaticus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2077]

Culture medium

ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7)

[Ref.: #2077]

Culture medium growth

[Ref.: #2077]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2077]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2077]			growth	26 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #50142]

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	81.6	17.824
C19:0 CYCLO ω8c	18.4	18.9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2077]	Sample type/isolated from	lake water
[Ref.: #2077]	Geographic location (country and/or sea, region)	Copenhagen
[Ref.: #2077]	Country	Denmark
[Ref.: #2077]	Country ISO 3 Code	DNK
[Ref.: #2077]	Continent	Europe

[Ref.: #50142]	Sample type/isolated from	Lake water
[Ref.: #50142]	Country	Denmark
[Ref.: #50142]	Country ISO 3 Code	DNK
[Ref.: #50142]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Lake water
[Ref.: #67770]	Geographic location (country and/or sea, region)	Copenhagen
[Ref.: #67770]	Country	Denmark
[Ref.: #67770]	Country ISO 3 Code	DNK
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Lake (large)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681795 (>99% sequence identity) for Ancylobacter from Microbeatlas

Aquatic Samples	2318
Soil Samples	1085
Animal Samples	1936
Plant Samples	762
Total Samples	6101

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2077]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Ancylobacter aquaticus strain ATCC 25396 16S ribosomal RNA gene, partial sequence	M62790	1433	GenBank ENA	100 tax ID	*
[Ref.: #20218]	Ancylobacter aquaticus gene for 16S rRNA, partial sequence, strain: NBRC 102453	AB681795	1408	GenBank ENA	100 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Ancylobacter aquaticus DSM 101	GCA_004339465	contig	GenBank ENA	100 tax ID
[Ref.: #66792]	Ancylobacter aquaticus strain DSM 101	100.11	wgs	PATRIC	100 tax ID	*
[Ref.: #66792]	Ancylobacter aquaticus DSM 101	2795386139	draft	JGI IMG/M	100 tax ID	*

[Ref.: #2077]	GC-content	67.3 mol%
[Ref.: #67770]	GC-content	67.3 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ancylobacter aquaticus strain DSM 101 PATRIC: 100.9
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ancylobacter aquaticus strain DSM 101 PATRIC: 100.11
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.18	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.071	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.303	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.967	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	60.235	no

Availability in culture collections External links

[Ref.: #2077]

Culture collection no.

DSM 101, ATCC 25396, CCM 1786, NCIB 9271, CCUG 30551, JCM 20518, JCM 6888, BUCSAV 410, CCUG 1820, IAM 12364, LMG 4052, NBRC 102453, NCIMB 9271, NCMB 1801, VKM B-1287

[Ref.: #86384]

SI-ID 889

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Starkeya koreensis sp. nov., isolated from rice straw.	Im WT, Aslam Z, Lee M, Ten LN, Yang DC, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64093-0	2006	*
Phylogeny	Ancylobacter polymorphus sp. nov. and Ancylobacter vacuolatus sp. nov.	Xin YH, Zhou YG, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.64118-0	2006	*
Phylogeny	Ancylobacter gelatini sp. nov., isolated from beach sediment of Zhairuo Island, China.	Wang P, Sheng H, Zheng K, Hong Y, Debnath SC, Yan C, Li K, Chen G, Xu J, Wu F, Guo Z, Zheng D	Arch Microbiol	10.1007/s00203-022-03048-9	2022	*

References

#2077

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#50142 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30551

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86384

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID889.1 )

* These data were automatically processed and therefore are not curated

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Ancylobacter aquaticus strain DSM 101

Ancylobacter aquaticus strain DSM 101

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