Strain identifier
BacDive ID: 17385
Type strain: 
Species: Ancylobacter aquaticus
Strain history: IAM 12364 <-- ATCC 25396 <-- H. D. Raj Mc-2 <-- D. Claus, Ørskov strain <-- J. Ørskov.
NCBI tax ID(s): 100 (species)
version 8.1 (current version)
General
@ref: 2077
BacDive-ID: 17385
DSM-Number: 101
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Ancylobacter aquaticus DSM 101 is a mesophilic, Gram-negative bacterium that was isolated from lake water.
NCBI tax id
- NCBI tax id: 100
- Matching level: species
strain history
| @ref | history |
|---|---|
| 2077 | <- J. Orskov |
| 67770 | IAM 12364 <-- ATCC 25396 <-- H. D. Raj Mc-2 <-- D. Claus, Ørskov strain <-- J. Ørskov. |
doi: 10.13145/bacdive17385.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Xanthobacteraceae
- genus: Ancylobacter
- species: Ancylobacter aquaticus
- full scientific name: Ancylobacter aquaticus (Ørskov 1928) Raj 1983
synonyms
- @ref: 20215
- synonym: Microcyclus aquaticus
@ref: 2077
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Xanthobacteraceae
genus: Ancylobacter
species: Ancylobacter aquaticus
full scientific name: Ancylobacter aquaticus (Ørskov 1928) Raj 1983
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.991
Culture and growth conditions
culture medium
- @ref: 2077
- name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7)
- growth: yes
- link: https://mediadive.dsmz.de/medium/7
- composition: Name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7) Composition: Agar 15.0 g/l Yeast extract 1.0 g/l Peptone 1.0 g/l Glucose 1.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 2077 | positive | growth | 26 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.995 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 50142 C18:1 ω7c /12t/9t 81.6 17.824 50142 C19:0 CYCLO ω8c 18.4 18.9 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 2077 | lake water | Copenhagen | Denmark | DNK | Europe |
| 50142 | Lake water | Denmark | DNK | Europe | |
| 67770 | Lake water | Copenhagen | Denmark | DNK | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Lake (large)
taxonmaps
- @ref: 69479
- File name: preview.99_6269.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_355;96_2984;97_3669;98_4644;99_6269&stattab=map
- Last taxonomy: Ancylobacter
- 16S sequence: AB681795
- Sequence Identity:
- Total samples: 6101
- soil counts: 1085
- aquatic counts: 2318
- animal counts: 1936
- plant counts: 762
Safety information
risk assessment
- @ref: 2077
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Ancylobacter aquaticus strain ATCC 25396 16S ribosomal RNA gene, partial sequence | M62790 | 1433 | ena | 100 |
| 20218 | Ancylobacter aquaticus gene for 16S rRNA, partial sequence, strain: NBRC 102453 | AB681795 | 1408 | ena | 100 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ancylobacter aquaticus strain DSM 101 | 100.11 | wgs | patric | 100 |
| 66792 | Ancylobacter aquaticus DSM 101 | 2795386139 | draft | img | 100 |
| 67770 | Ancylobacter aquaticus DSM 101 | GCA_004339465 | contig | ncbi | 100 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 2077 | 67.3 | |
| 67770 | 67.3 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 86.191 | no |
| flagellated | no | 93.539 | no |
| gram-positive | no | 97.857 | no |
| anaerobic | no | 98.758 | no |
| aerobic | yes | 93.185 | no |
| halophile | no | 82.391 | no |
| spore-forming | no | 96.218 | no |
| thermophile | no | 98.496 | yes |
| glucose-util | yes | 94.183 | no |
| glucose-ferment | no | 90.981 | no |
External links
@ref: 2077
culture collection no.: DSM 101, ATCC 25396, CCM 1786, NCIB 9271, CCUG 30551, JCM 20518, JCM 6888, BUCSAV 410, CCUG 1820, IAM 12364, LMG 4052, NBRC 102453, NCIMB 9271, NCMB 1801, VKM B-1287
straininfo link
- @ref: 86384
- straininfo: 889
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16738088 | Ancylobacter polymorphus sp. nov. and Ancylobacter vacuolatus sp. nov. | Xin YH, Zhou YG, Chen WX | Int J Syst Evol Microbiol | 10.1099/ijs.0.64118-0 | 2006 | Alphaproteobacteria/*classification/cytology/*genetics/growth & development, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics | Genetics |
| Phylogeny | 17012571 | Starkeya koreensis sp. nov., isolated from rice straw. | Im WT, Aslam Z, Lee M, Ten LN, Yang DC, Lee ST | Int J Syst Evol Microbiol | 10.1099/ijs.0.64093-0 | 2006 | Alphaproteobacteria/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics | Genetics |
| Phylogeny | 35759057 | Ancylobacter gelatini sp. nov., isolated from beach sediment of Zhairuo Island, China. | Wang P, Sheng H, Zheng K, Hong Y, Debnath SC, Yan C, Li K, Chen G, Xu J, Wu F, Guo Z, Zheng D | Arch Microbiol | 10.1007/s00203-022-03048-9 | 2022 | *Alphaproteobacteria/classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2077 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 50142 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 30551) | https://www.ccug.se/strain?id=30551 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 86384 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID889.1 | StrainInfo: A central database for resolving microbial strain identifiers |