Name: Vibrio tubiashii DSM 19142
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17330

Type strain:

Species: Vibrio tubiashii

Culture col. no.: DSM 19142, ATCC 19109, CAIM 313, CCUG 19118, CECT 4196, CIP 102760, LMG 10936, NBRC 15644, NCIMB 1340, CCUG 38428

Strain history: CIP <- 1987, NCIB <- 1965, H.S. Tubiash: strain Milford 74, type J, Vibrio anguillarum

NCBI tax ID(s): 1051646 (strain), 29498 (species)

SI-ID 5124

LMG 10936, ATCC 19109, CCUG 19118, CIP 102760, NCIMB 1340, CCUG 38428, CECT 4196, NCMB 1340, IFO 15644, KCTC 2728, NBRC 15644, BCRC 15893, CCRC 15893, DSM 19142

Special Collections

Section

When using BacDive for research please cite our paper

Vibrio tubiashii DSM 19142 is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from Moribund larvae of hard clam,Mercenaria mercenaria.

Gram-negative
motile
rod-shaped
aerobe
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio tubiashii**
	Full Scientific Name (LPSN)	Vibrio tubiashii Hada et al. 1984

Information on morphological and physiological properties Morphology

[Ref.: #123680]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %99.917
[Ref.: #125439]	Gram stain	negative Confidence in %95.5

[Ref.: #123680]	Cell shape	rod-shaped

[Ref.: #123680]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7839]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7839]

Culture medium growth

[Ref.: #7839]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7839]

Culture medium composition

expand / minimize

[Ref.: #42194]

Culture medium

Marine agar (MA)

[Ref.: #42194]

Culture medium growth

[Ref.: #42194]

Culture medium composition

expand / minimize

[Ref.: #123680]

Culture medium

CIP Medium 13

[Ref.: #123680]

Culture medium growth

[Ref.: #123680]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7839]		growth	28 °C
[Ref.: #42194]		growth	25 °C
[Ref.: #54251]		growth	20-22 °C
[Ref.: #123680]		growth	15-37 °C
[Ref.: #123680]	negative	growth	5 °C
[Ref.: #123680]	negative	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #54251]	Oxygen tolerance	aerobe
[Ref.: #123680]	Oxygen tolerance	facultative anaerobe

[Ref.: #125438]	Ability of spore formation	no Confidence in %91.095
[Ref.: #125439]	Ability of spore formation	no Confidence in %97.7

	Salt	Tested relation		Salt conc.
[Ref.: #123680]	NaCl		growth	2-8	%
[Ref.: #123680]	NaCl	no	growth	0	%
[Ref.: #123680]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #123680]	citrate ChEBI	-	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #123680]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #123680]	glucose ChEBI	+	fermentation
[Ref.: #123680]	glucose ChEBI	-	degradation
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #123680]	lactose ChEBI	-	fermentation
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #123680]	nitrate ChEBI	+	reduction
[Ref.: #123680]	nitrate ChEBI	+	respiration
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #123680]	nitrite ChEBI	-	reduction
[Ref.: #123680]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68369]	tryptophan ChEBI	+	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #123680]		indole ChEBI	yes
[Ref.: #68369]		indole ChEBI	yes	* from API 20NE

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #123680]	acetoin ChEBI	-
[Ref.: #123680]	glucose ChEBI		-
[Ref.: #68369]	indole ChEBI			+	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123680]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123680]	amylase	+
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #123680]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123680]	caseinase	+	3.4.21.50
[Ref.: #123680]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #123680]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123680]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #123680]	gelatinase	+
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #123680]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123680]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123680]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123680]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123680]	oxidase	+
[Ref.: #123680]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #123680]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123680]	tryptophan deaminase	-
[Ref.: #123680]	tween esterase	+
[Ref.: #123680]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #7839]	26177	+	+	+	+	-	+	+	+	+	-	+	+	+	+	+	-	-	+	+	-	+
[Ref.: #7839]	28160	+	+	+	+	-	+	+	+	+/-	-	+/-	+/-	-	+	+	-	-	+	-	-	+
[Ref.: #7839]	28161	+	+	+	+	-	+	+	+	+/-	-	+/-	+/-	-	+	+	-	-	+	-	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123680]	282	not determinedn.d.	+	+	+	+	+	-	+	+	-	+	+	+	-	+	+	+	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	-	+	-	+	+	+	+	+	+	+	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123680]	7211	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #54251]	Sample type/isolated from	Moribund larvae of hard clam,Mercenaria mercenaria
[Ref.: #54251]	Geographic location (country and/or sea, region)	Connecticut,Milford
[Ref.: #54251]	Country	USA
[Ref.: #54251]	Country ISO 3 Code	USA
[Ref.: #54251]	Continent	North America

[Ref.: #7839]	Sample type/isolated from	juvenile larvae of hard clam (Mercenaria mercenaria)
[Ref.: #7839]	Geographic location (country and/or sea, region)	Lagenda
[Ref.: #7839]	Country	France
[Ref.: #7839]	Country ISO 3 Code	FRA
[Ref.: #7839]	Continent	Europe

[Ref.: #123680]	Sample type/isolated from	Animal, Moribund larvae and juvenile hard clams
[Ref.: #123680]	Geographic location (country and/or sea, region)	Connecticut
[Ref.: #123680]	Country	United States of America
[Ref.: #123680]	Country ISO 3 Code	USA
[Ref.: #123680]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X74725 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	195
Soil Samples	2
Animal Samples	10
Plant Samples	1
Total Samples	208

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7839]	Pathogenicity (animal)	yes
[Ref.: #7839]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123680]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7839]	V.tubiashi (ATCC 19109T) gene for 16S ribosomal RNA	X74725	1436	GenBank ENA	1051646 tax ID
[Ref.: #20218]	Vibrio tubiashii strain ATCC 19109 16S ribosomal RNA gene, partial sequence	HQ890464	1471	GenBank ENA	1051646 tax ID	*
[Ref.: #124043]	Vibrio tubiashii gene for 16S rRNA, partial sequence, strain: NBRC 15644.	AB680929	1479	GenBank ENA	1051646 tax ID	*
[Ref.: #20218]	Vibrio tubiashii DNA, 16S-23S rRNA intergenic spacer type 1 and 23S rRNA, partial sequence, strain: ATCC 19109	AB255736	261	GenBank ENA	1051646 tax ID	*
[Ref.: #20218]	Vibrio tubiashii DNA, 16S-23S rRNA intergenic spacer type 2 and 23S rRNA, partial sequence, strain: ATCC 19109	AB255737	240	GenBank ENA	1051646 tax ID	*
[Ref.: #124043]	Vibrio tubiashii strain ATCC 19109(T) 16S ribosomal RNA gene, partial sequence.	OQ147524	1102	GenBank ENA	29498 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio tubiashii ATCC 19109	2627854020	complete	JGI IMG/M	1051646 tax ID	*
[Ref.: #66792]	Vibrio tubiashii ATCC 19109	GCA_000222665	contig	GenBank ENA	1051646 tax ID	*
[Ref.: #66792]	Vibrio tubiashii ATCC 19109	1051646.3	wgs	PATRIC	1051646 tax ID	*
[Ref.: #66792]	Vibrio tubiashii ATCC 19109	1051646.20	plasmid	PATRIC	1051646 tax ID	*
[Ref.: #66792]	Vibrio tubiashii ATCC 19109	1051646.9	complete	PATRIC	1051646 tax ID	*
[Ref.: #66792]	Vibrio tubiashii ATCC 19109	1051646.21	plasmid	PATRIC	1051646 tax ID	*

[Ref.: #7839]

GC-content

44 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio tubiashii ATCC 19109 ATCC 19109 NCBI: GCA_000772105.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99.917	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	94.937	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	61.648	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	91.095	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	100	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	87.215	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio tubiashii ATCC 19109 PATRIC: 1051646.9
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	71
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	95.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	61.3
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	97.7

Availability in culture collections External links

[Ref.: #7839]

Culture collection no.

DSM 19142, ATCC 19109, CAIM 313, CCUG 19118, CECT 4196, CIP 102760, LMG 10936, NBRC 15644, NCIMB 1340, CCUG 38428

[Ref.: #86330]

SI-ID 5124

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of the Larval Shellfish Pathogen Vibrio tubiashii Type Strain ATCC 19109.	Richards GP, Needleman DS, Watson MA, Bono JL	Genome Announc	10.1128/genomeA.01252-14	2014	*
Enzymology	Mortalities of Eastern and Pacific oyster Larvae caused by the pathogens Vibrio coralliilyticus and Vibrio tubiashii.	Richards GP, Watson MA, Needleman DS, Church KM, Hase CC	Appl Environ Microbiol	10.1128/AEM.02930-14	2014	*
Phylogeny	Vibrio caribbeanicus sp. nov., isolated from the marine sponge Scleritoderma cyanea.	Hoffmann M, Monday SR, Allard MW, Strain EA, Whittaker P, Naum M, McCarthy PJ, Lopez JV, Fischer M, Brown EW	Int J Syst Evol Microbiol	10.1099/ijs.0.032375-0	2011	*
Phylogeny	Vibrio porteresiae sp. nov., a diazotrophic bacterium isolated from a mangrove-associated wild rice (Porteresia coarctata Tateoka).	Rameshkumar N, Fukui Y, Sawabe T, Nair S	Int J Syst Evol Microbiol	10.1099/ijs.0.65604-0	2008	*

References

#7839

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19142

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42194 ; Curators of the CIP;
#54251 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 38428

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86330

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5124.1 )

#123680 Collection of Institut Pasteur ; Curators of the CIP; CIP 102760

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Vibrio tubiashii ATCC 19109 ATCC 19109

Vibrio tubiashii ATCC 19109

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