Name: Vibrio mytili 165
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17331

Type strain:

Species: Vibrio mytili

Strain Designation: 165

Culture col. no.: NCIMB 13275, DSM 19137, ATCC 51288, CAIM 528, CCUG 38424, CECT 632, LMG 19157, CIP 103929

Strain history: CIP <- 1993, M.J. Pujalte, Valencia Univ., Spain: strain 165

NCBI tax ID(s): 50718 (species)

SI-ID 14086

LMG 19157, ATCC 51288, CCUG 38424, CECT 632, NCIMB 13275, CIP 103929, DSM 19137

Section

Vibrio mytili 165 is an aerobe, mesophilic, motile bacterium that was isolated from Mytilus edulis.

motile
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio mytili**
	Full Scientific Name (LPSN)	Vibrio mytili Pujalte et al. 1993

Information on morphological and physiological properties Morphology

[Ref.: #121217]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #121217]	Cell shape	rod-shaped

[Ref.: #121217]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.105

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7935]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7935]

Culture medium growth

[Ref.: #7935]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7935]

Culture medium composition

expand / minimize

[Ref.: #34922]

Culture medium

Marine agar (MA)

[Ref.: #34922]

Culture medium growth

[Ref.: #34922]

Culture medium composition

expand / minimize

[Ref.: #121217]

Culture medium

CIP Medium 13

[Ref.: #121217]

Culture medium growth

[Ref.: #121217]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7935]		growth	28 °C
[Ref.: #34922]		growth	30 °C
[Ref.: #54248]		growth	30 °C
[Ref.: #121217]		growth	41 °C
[Ref.: #121217]	no	growth	5 °C

[Ref.: #7935]	Temperature range	mesophilic
[Ref.: #34922]	Temperature range	mesophilic
[Ref.: #54248]	Temperature range	mesophilic
[Ref.: #121217]	Temperature range	thermophilic
[Ref.: #121217]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #54248]	Oxygen tolerance	aerobe
[Ref.: #121217]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #121217]		NaCl		growth	2-10	%
[Ref.: #121217]		NaCl	no	growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #121217]	citrate ChEBI	-	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #121217]	nitrate ChEBI	+	reduction
[Ref.: #121217]	nitrate ChEBI	+	respiration
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #121217]	nitrite ChEBI	-	reduction
[Ref.: #121217]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #121217]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #121217]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #121217]	acetoin ChEBI	-
[Ref.: #121217]	glucose ChEBI		+
[Ref.: #68369]	indole ChEBI			-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #121217]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #121217]	amylase	+
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #121217]	beta-galactosidase	+	3.2.1.23
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #121217]	catalase	+	1.11.1.6
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #121217]	DNase	+
[Ref.: #121217]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #121217]	lysine decarboxylase	-	4.1.1.18
[Ref.: #121217]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121217]	oxidase	+
[Ref.: #121217]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #7935]	23441	+	-	+	+	-	+	-	+	+	+	-	+	+	+	+	-	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7935]	Sample type/isolated from	Mytilus edulis
[Ref.: #7935]	Host species	Mytilus edulis
[Ref.: #7935]	Geographic location (country and/or sea, region)	Valencia
[Ref.: #7935]	Country	Spain
[Ref.: #7935]	Country ISO 3 Code	ESP
[Ref.: #7935]	Continent	Europe

[Ref.: #54248]	Sample type/isolated from	Mussels (Mytilus edulis)
[Ref.: #54248]	Geographic location (country and/or sea, region)	Valencia
[Ref.: #54248]	Country	Spain
[Ref.: #54248]	Country ISO 3 Code	ESP
[Ref.: #54248]	Continent	Europe

[Ref.: #121217]	Sample type/isolated from	Mussels. atlantic spanish hatcheries
[Ref.: #121217]	Geographic location (country and/or sea, region)	Valencia
[Ref.: #121217]	Country	Spain
[Ref.: #121217]	Country ISO 3 Code	ESP
[Ref.: #121217]	Continent	Europe
[Ref.: #121217]	Isolation date	1986
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7935]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121217]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7935]	V.mytili 16S ribosomal RNA	X99761	1441	ENA	50718 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio mytili CAIM 528	GCA_000830505	contig	GenBank	50718 tax ID	*
[Ref.: #66792]	Vibrio mytili CAIM 528	50718.3	wgs	PATRIC	50718 tax ID	*
[Ref.: #66792]	Vibrio mytili CAIM 528	2630968428	draft	JGI IMG/M	50718 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Vibrio mytili CAIM 528 PATRIC: 50718.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio mytili CAIM 528 PATRIC: 50718.3
[Ref.: #69480]	gram-positive	no	98.988	no
[Ref.: #69480]	anaerobic	no	96.629	no
[Ref.: #69480]	halophile	yes	60.87	no
[Ref.: #69480]	spore-forming	no	95.356	no
[Ref.: #69480]	glucose-util	yes	93.051	no
[Ref.: #69480]	aerobic	yes	85.82	yes
[Ref.: #69480]	thermophile	no	99.044	yes
[Ref.: #69480]	flagellated	yes	91.039	no
[Ref.: #69480]	motile	yes	92.178	no
[Ref.: #69480]	glucose-ferment	yes	87.905	no

Availability in culture collections External links

[Ref.: #7935]

Culture collection no.

NCIMB 13275, DSM 19137, ATCC 51288, CAIM 528, CCUG 38424, CECT 632, LMG 19157, CIP 103929

[Ref.: #86331]

SI-ID 14086

References

#7935

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19137

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#34922 ; Curators of the CIP;
#54248 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 38424

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86331

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14086.1 )

#121217 Collection of Institut Pasteur ; Curators of the CIP; CIP 103929
* These data were automatically processed and therefore are not curated

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Vibrio mytili CAIM 528

Vibrio mytili CAIM 528

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