Vibrio harveyi (DSM 19623, ATCC 14126, CCUG 28584)

Name: Vibrio harveyi (DSM 19623, ATCC 14126, CCUG 28584)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17263

Type strain

Culture col. no. DSM 19623 ATCC 14126 CCUG 28584 CECT 525 LMG 4044 8 more

NCBI tax ID(s) 1219071 669

Special Collections DSMZ CCUG JCM CIP

History <- CCUG <- CECT <- NCIMB <- ATCC <- F. H. Johnson LMG 4044 <-- NCIMB 1280 <-- ATCC 14126 <-- F. H. Johnson. CIP <- 1988, NCIB <- 1965, ATCC, Beneckea harveyi <- F.H. Johnson, Photobacterium harveyi

Links

Vibrio harveyi DSM 19623 is a facultative anaerobe, mesophilic, Gram-negative animal pathogen that produces toxins and was isolated from dead luminescing amphipod .

toxin production Gram-negative motile rod-shaped facultative anaerobe mesophilic animal pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 5084

LMG 4044,ATCC 14126,NCMB 1280,JCM 33361,CCUG 28584,CECT 525,CIP 103192,NCTC 12970,NCIMB 1280,IFO 15634,CCM 598,NCMB 2,LMD 80.33,CCRC 12907,NCIMB 2,NCCB 80033,NBRC 15634,BCRC 12907,DSM 19623

@ref 20215

Last LPSN update 2025-12-16 09:51:03

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio harveyi

Full scientific name Vibrio harveyi (Johnson and Shunk 1936) Baumann et al. 1981

Synonyms (5)

Vibrio trachuri
"Achromobacter harveyi"
Vibrio carchariae
Beneckea harveyi
Lucibacterium harveyi

BacDive ID	Other strains from **Vibrio harveyi** (10)	Type strain
17260	V. harveyi M17-LP, DSM 2332
17262	V. harveyi 334, Ei2, DSM 6904, ATCC 33867
17264	V. harveyi 1116b, DSM 23069, ATCC 35084, CCUG 19116, ...
100261	V. harveyi STI09615(IMET), 828-20,
100262	V. harveyi STI09617(IMET), 828-43,
138097	V. harveyi CIP 104774, JCM 9677
139509	V. harveyi 120A, CIP 105614
144145	V. harveyi CCUG 23159
148390	V. harveyi CCUG 35340
156594	V. harveyi CCUG 63236

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438	negative		100
125439	negative		98.9
119845	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
38120	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
8215	MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)	Medium recipe at MediaDive	Name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) Composition: NaCl 19.4 g/l Agar 15.0 g/l MgCl2 8.8 g/l Peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
119845	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8215	positive	growth	28	mesophilic
38120	positive	growth	25	mesophilic
49288	positive	growth	26	mesophilic
67770	positive	growth	25	mesophilic
119845	positive	growth	15-37
119845	negative	growth	5
119845	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
119845	facultative anaerobe
125439	obligate aerobe	98.8

Spore formation

@ref	Spore formation	Confidence
125439		99

Compound production

8215

Compoundtetrodotoxin

Halophily

@ref	Salt	Growth	Tested relation	Concentration
49288	NaCl	positive	growth	3 %
119845	NaCl	positive	growth	2-6 %
119845	NaCl		growth	0 %
119845	NaCl		growth	8 %
119845	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
119845	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
119845	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
119845	17234 ChEBI	glucose	+	fermentation
119845	17234 ChEBI	glucose	+	degradation
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
119845	17716 ChEBI	lactose	-	fermentation
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
119845	17632 ChEBI	nitrate	+	reduction
119845	17632 ChEBI	nitrate	+	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68368	17632 ChEBI	nitrate	+	reduction	from API 20E
119845	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
119845	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68369	27897 ChEBI	tryptophan	+	energy source	from API 20NE
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119845	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68369	35581 ChEBI	indole	from API 20NE
119845	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
119845	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-			from API 20E
119845	17234 ChEBI	glucose		+
68369	35581 ChEBI	indole			+	from API 20NE
68368	35581 ChEBI	indole			+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119845	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119845	amylase	+
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
119845	beta-galactosidase	-	3.2.1.23
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119845	caseinase	-	3.4.21.50
119845	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
119845	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119845	gamma-glutamyltransferase	-	2.3.2.2
119845	gelatinase	+
68369	gelatinase	+		from API 20NE
68368	gelatinase	+		from API 20E
119845	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
119845	lipase	+
68382	lipase (C 14)	+		from API zym
119845	lysine decarboxylase	+	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119845	ornithine decarboxylase	+	4.1.1.17
119845	oxidase	+
119845	phenylalanine ammonia-lyase	+	4.3.1.24
119845	protease	+
68382	trypsin	+	3.4.21.4	from API zym
119845	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
119845	tween esterase	+
119845	urease	+	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
8215	-	-	+	+	+	-	-	-	+	-	+	+	+	-	-	-	+	+	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
8215	-	+	+	+	+	-	-	-	+	-	+	+	+	-	-	-	+	+	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
8215	-	-	+/-	-	+	-	-	-	+	-	+	+	+	-	-	-	+	+	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119845	-	+	+	+	+	+	-	-	+	+	+	+	+	-	-	-	-	+	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
8215	+	+	+	-	-	+	+	+	-	-	-	+	-	-	+	-	-	+	+	-	+
8215	+	+	+	-	-	+	+	+	-	-	+	+	-	+	+	-	-	+	+	-	+
8215	+	+	+	-	-	+	+	+	+	+	+	+	+	+	+	+	-	+	+	-	+
8215	+	+	+	-	-	+	+	+	+/-	-	+/-	+	+/-	+	+	-	-	+	+	-	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119845	not determinedn.d.	-	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	+	-	-	+/-	+	+	+	-	+	+	+	-	-	-	+	+	-	+/-	-	-	-	-	-	-	-	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119845	not determinedn.d.	-	-	+	-	-	-	+	-	-	+	+	-	-	-	+	+	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	+	+	+	+	-	-	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Crustacea
#Host	#Other	#Decomposing animal

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
8215	dead luminescing amphipod (Talorchestria sp.)	Talorchestria	Massachusetts	USA	USA	North America
49288	Dead luminescing amphipod (Talorchestia sp.)		Massachusetts	USA	USA	North America
119845	Animal, Dead luminescing amphipod		Woods Hole, Massachusetts	United States of America	USA	North America

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
8215	yes, in single cases		1	Risk group (German classification) According to TRBA 466
119845			2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM147157v2 assembly for Vibrio harveyi FDAARGOS_109	contig	GCA_001471575	669.47	2667527887	669	77.5
67770	51765_C01 assembly for Vibrio harveyi NCTC12970	contig	GCA_900460165	669.166	8042015350	669	71.28
67770	ASM159114v1 assembly for Vibrio harveyi NBRC 15634 = ATCC 14126 = KCTC 12724	contig	GCA_001591145	1219071.9	2731957638	1219071	40.54
67770	ASM40030v1 assembly for Vibrio harveyi NBRC 15634 = ATCC 14126 = KCTC 12724	scaffold	GCA_000400305	1219071.3	2571042430	1219071	29.13
67770	Vh-14126.1 assembly for Vibrio harveyi NBRC 15634 = ATCC 14126 = KCTC 12724	contig	GCA_001263135		2636415586	1219071	26.35

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Vibrio harveyi VIB 295 16S ribosomal RNA gene, partial sequence	AF426811	744	669
20218	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence	AF426825	744	669
20218	Vibrio harveyi 16S rRNA	D11205	217	669
20218	Vibrio harveyi 16S rRNA	D11254	214	669
20218	Vibrio harveyi 16S rRNA	D11303	191	669
20218	Vibrio harveyi strain ATCC 14126 16S ribosomal RNA gene, partial sequence	KC954162	845	669
20218	V.harveyi (ATCC 14126T) gene for 16S ribosomal RNA	X74706	1488	669
8215	V.harveyi 16S ribosomal RNA	X56578	1485	669
67770	Vibrio harveyi strain NCIMB1280T 16S ribosomal RNA gene, partial sequence	AY750575	1436	669
124043	Vibrio harveyi gene for 16S rRNA, partial sequence, strain: NBRC 15634.	AB680920	1477	669
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426805	744	669
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426806	744	669
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426807	745	174895
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426808	744	174898
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426809	745	174897
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426810	745	174896
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426812	744	174893
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426813	745	174886
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426815	744	174894
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426816	745	174888
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426817	744	174892
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426818	745	174899
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426819	744	175181
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426820	745	174889
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426821	745	174887
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426822	744	174891
124043	Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence.	AF426823	744	174890
124043	Vibrio harveyi strain NBRC 15634 16S ribosomal RNA gene, partial sequence.	ON872250	811	669
124043	Vibrio harveyi strain NBRC 15634 16S ribosomal RNA gene, partial sequence.	OQ147504	467	669
124043	Vibrio harveyi strain NBRC 15634 16S ribosomal RNA gene, partial sequence.	MW198073	601	669

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio harveyi NBRC 15634 = ATCC 14126 = KCTC 12724
NCBI: GCA_000400305

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.90	no
125439	motility	BacteriaNetⓘ	yes	79.60	no
125439	spore_formation	BacteriaNetⓘ	no	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio harveyi NBRC 15634 = ATCC 14126
PATRIC: 1219071.9

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	95.46	no
125438	spore-forming	spore-formingⓘ	no	84.82	no
125438	aerobic	aerobicⓘ	no	66.25	yes
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	86.08	no

Literature

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	Genomic and Biological Profile of a Novel Bacteriophage, Vibrio phage Virtus, Which Improves Survival of Sparus aurata Larvae Challenged with Vibrio harveyi.	Droubogiannis S, Katharios P.	Pathogens	10.3390/pathogens11060630	2022
	Disrupting quorum sensing as a strategy to inhibit bacterial virulence in human, animal, and plant pathogens.	Gonzales M, Kergaravat B, Jacquet P, Billot R, Grizard D, Chabriere E, Plener L, Daude D.	Pathog Dis	10.1093/femspd/ftae009	2024
	Applying molecular and phenotypic screening assays to identify efficient quorum quenching lactonases.	Billot R, Plener L, Grizard D, Elias MH, Chabriere E, Daude D.	Enzyme Microb Technol	10.1016/j.enzmictec.2022.110092	2022
	Antifouling Activity of Halogenated Compounds Derived from the Red Alga Sphaerococcus coronopifolius: Potential for the Development of Environmentally Friendly Solutions.	Quemener M, Kikionis S, Fauchon M, Toueix Y, Aulanier F, Makris AM, Roussis V, Ioannou E, Hellio C.	Mar Drugs	10.3390/md20010032	2021
Pathogenicity	Allelochemicals Produced by Brown Macroalgae of the Lobophora Genus Are Active against Coral Larvae and Associated Bacteria, Supporting Pathogenic Shifts to Vibrio Dominance.	Morrow KM, Bromhall K, Motti CA, Munn CB, Bourne DG.	Appl Environ Microbiol	10.1128/aem.02391-16	2017
	An improved detection and quantification method for the coral pathogen Vibrio coralliilyticus.	Wilson B, Muirhead A, Bazanella M, Huete-Stauffer C, Vezzulli L, Bourne DG.	PLoS One	10.1371/journal.pone.0081800	2013
Enzymology	Detection and quantification of the coral pathogen Vibrio coralliilyticus by real-time PCR with TaqMan fluorescent probes.	Pollock FJ, Morris PJ, Willis BL, Bourne DG.	Appl Environ Microbiol	10.1128/aem.00330-10	2010
Genetics	Characterization of a novel lytic bacteriophage VPMCC14 which efficiently controls Vibrio harveyi in Penaeus monodon culture.	Kar P, Ghosh S, Payra P, Chakrabarti S, Pradhan S, Mondal KC, Ghosh K.	Int Microbiol	10.1007/s10123-023-00456-9	2024
	Water Parameters Predicting the Seasonal and Spatial Dynamics of the Vibrio Harveyi- and Splendidus-Clade Pathogens.	Royer K, Barkovskii AL.	Microorganisms	10.3390/microorganisms13092167	2025
	Genomic analysis of Vibrio harveyi strain PH1009, a potential multi-drug resistant pathogen due to acquisition of toxin genes.	De Mesa CA, Mendoza RM, Penir SMU, de la Pena LD, Amar EC, Saloma CP.	Heliyon	10.1016/j.heliyon.2023.e14926	2023
	Genetic Transformation of the Model Quorum Sensing Bacterium Vibrio campbellii by Electroporation.	Tschirhart T, Wang Z, Leary DH, Vora GJ.	Genes (Basel)	10.3390/genes16060626	2025
	Antibacterial and antibiofilm activity of halogenated phenylboronic acids against Vibrio parahaemolyticus and Vibrio harveyi.	Sathiyamoorthi E, Lee JH, Lee J.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1340910	2024
	Antimicrobial Efficacy of Trifluoro-Anilines Against Vibrio Species.	Sathiyamoorthi E, Boya BR, Lee JH, Lee J.	Int J Mol Sci	10.3390/ijms26020623	2025
	New Cyclic Pentapeptides from the Mangrove-Derived Aspergillus fumigatus GXIMD 03099.	Wang Y, Cao G, Gan Y, Lin X, Yi X, Zhao L, Liu Y, Gao C, Bai M.	Mar Drugs	10.3390/md22060282	2024
	Antibacterial and antibiofilm activities of iodinated hydrocarbons against Vibrio parahaemolyticus and Staphylococcus aureus.	Faleye OO, Faleye OS, Lee JH, Lee J.	Sci Rep	10.1038/s41598-024-55479-7	2024
	A genome-wide association study of the occurrence of genetic variations in Edwardsiella piscicida, Vibrio harveyi, and Streptococcus parauberis under stressed environments.	Roh H.	J Fish Dis	10.1111/jfd.13668	2022
	Bacillus subtilis Effects on Growth Performance and Health Status of Totoaba macdonaldi Fed with High Levels of Soy Protein Concentrate.	Olmos J, Lopez LM, Gorrino A, Galaviz MA, Mercado V.	Animals (Basel)	10.3390/ani12233422	2022
	Antimicrobial and antibiofilm activities of formylchromones against Vibrio parahaemolyticus and Vibrio harveyi.	Sathiyamoorthi E, Lee JH, Tan Y, Lee J.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1234668	2023
	Vibrio gazogenes-dependent disruption of aflatoxin biosynthesis in Aspergillus flavus: the connection with endosomal uptake and hyphal morphogenesis.	Jesmin R, Cary JW, Lebar MD, Majumdar R, Gummadidala PM, Dias T, Chandler S, Basu P, Decho AW, Keller NP, Chanda A.	Front Microbiol	10.3389/fmicb.2023.1208961	2023
Genetics	Phylogenomic diversity of Vibrio species and other Gammaproteobacteria isolated from Pacific oysters (Crassostrea gigas) during a summer mortality outbreak.	Worden PJ, Bogema DR, Micallef ML, Go J, Deutscher AT, Labbate M, Green TJ, King WL, Liu M, Seymour JR, Jenkins C.	Microb Genom	10.1099/mgen.0.000883	2022
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Genetics	Hybridization capture sequencing for Vibrio spp. and associated virulence factors.	Brumfield KD, Enke S, Swan BK, Carrasquilla L, Lee MD, Stern DB, Gieser L, Hasan NA, Usmani M, Jutla AS, Huq A, Caviness K, Goodrich JS, Bull R, Colwell RR.	mBio	10.1128/mbio.00516-25	2025
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Metabolism	Delineating virulence of Vibrio campbellii: a predominant luminescent bacterial pathogen in Indian shrimp hatcheries.	Kumar S, Kumar CB, Rajendran V, Abishaw N, Anand PSS, Kannapan S, Nagaleekar VK, Vijayan KK, Alavandi SV.	Sci Rep	10.1038/s41598-021-94961-4	2021
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Pathogenicity	Specific Molecular Signatures for Type II Crustins in Penaeid Shrimp Uncovered by the Identification of Crustin-Like Antimicrobial Peptides in Litopenaeus vannamei.	Barreto C, Coelho JDR, Yuan J, Xiang J, Perazzolo LM, Rosa RD.	Mar Drugs	10.3390/md16010031	2018
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Pathogenicity	Massive Gene Expansion and Sequence Diversification Is Associated with Diverse Tissue Distribution, Regulation and Antimicrobial Properties of Anti-Lipopolysaccharide Factors in Shrimp.	Matos GM, Schmitt P, Barreto C, Farias ND, Toledo-Silva G, Guzman F, Destoumieux-Garzon D, Perazzolo LM, Rosa RD.	Mar Drugs	10.3390/md16100381	2018
Cultivation	Development and evaluation of culture media based on extracts of the cyanobacterium Arthrospira platensis.	Kheirabadi E, Macia J.	Front Microbiol	10.3389/fmicb.2022.972200	2022
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	Antifouling coating based on biopolymers (PCL/ PLA) and bioactive extract from the sea cucumber Stichopus herrmanni.	Darya M, Abdolrasouli MH, Yousefzadi M, Sajjadi MM, Sourinejad I, Zarei M.	AMB Express	10.1186/s13568-022-01364-3	2022
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Metabolism	The anguibactin biosynthesis and transport genes are encoded in the chromosome of Vibrio harveyi: a possible evolutionary origin for the pJM1 plasmid-encoded system of Vibrio anguillarum?	Naka H, Actis LA, Crosa JH.	Microbiologyopen	10.1002/mbo3.65	2013
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	Comparative genomic analyses identify the Vibrio harveyi genome sequenced strains BAA-1116 and HY01 as Vibrio campbellii.	Lin B, Wang Z, Malanoski AP, O'Grady EA, Wimpee CF, Vuddhakul V, Alves N, Thompson FL, Gomez-Gil B, Vora GJ.	Environ Microbiol Rep	10.1111/j.1758-2229.2009.00100.x	2010
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Biotechnology	Prevalence of Bacterial Coinfections with Vibrio harveyi in the Industrialized Flow-through Aquaculture Systems in Hainan Province: A Neglected High-Risk Lethal Causative Agent to Hybrid Grouper.	Xu H, Zeng YH, Yin WL, Lu HB, Gong XX, Zhang N, Zhang X, Long H, Ren W, Cai XN, Huang AY, Xie ZY.	Int J Mol Sci	10.3390/ijms231911628	2022
	Cooperation and cheating orchestrate Vibrio assemblages and polymicrobial synergy in oysters infected with OsHV-1 virus.	Oyanedel D, Lagorce A, Bruto M, Haffner P, Morot A, Labreuche Y, Dorant Y, de La Forest Divonne S, Delavat F, Inguimbert N, Montagnani C, Morga B, Toulza E, Chaparro C, Escoubas JM, Gueguen Y, Vidal-Dupiol J, de Lorgeril J, Petton B, Degremont L, Tourbiez D, Pimpare LL, Leroy M, Romatif O, Pouzadoux J, Mitta G, Le Roux F, Charriere GM, Travers MA, Destoumieux-Garzon D.	Proc Natl Acad Sci U S A	10.1073/pnas.2305195120	2023
	Effects of poly(3-hydroxybutyrate) [P(3HB)] coating on the bacterial communities of artificial structures.	Chai YJ, Syauqi TA, Sudesh K, Ee TL, Ban CC, Kar Mun AC, Anne Strain EM, Merican F, Rahim MA, Md Salleh K, Yin CS.	PLoS One	10.1371/journal.pone.0300929	2024
	The mRNA binding-mediated self-regulatory function of small heat shock protein IbpA in gamma-proteobacteria is conferred by a conserved arginine.	Cheng Y, Miwa T, Taguchi H.	J Biol Chem	10.1016/j.jbc.2023.105108	2023
Genetics	A Novel Benthic Phage Infecting Shewanella with Strong Replication Ability.	Wang Z, Zhao J, Wang L, Li C, Liu J, Zhang L, Zhang Y.	Viruses	10.3390/v11111081	2019
Phylogeny	The fur gene as a new phylogenetic marker for Vibrionaceae species identification.	Machado H, Gram L.	Appl Environ Microbiol	10.1128/aem.00058-15	2015
	Wound infection with Vibrio harveyi following a traumatic leg amputation after a motorboat propeller injury in Mallorca, Spain: a case report and review of literature.	Brehm TT, Berneking L, Rohde H, Chistner M, Schlickewei C, Sena Martins M, Schmiedel S.	BMC Infect Dis	10.1186/s12879-020-4789-2	2020
	Real-Time PCR Protocol for Detection and Quantification of Three Pathogenic Members of the Vibrionaceae Family.	Costa C, Ferreira GD, Simoes M, Silva JL, Campos MJ.	Microorganisms	10.3390/microorganisms10102060	2022
Metabolism	Quorum sensing signal production and microbial interactions in a polymicrobial disease of corals and the coral surface mucopolysaccharide layer.	Zimmer BL, May AL, Bhedi CD, Dearth SP, Prevatte CW, Pratte Z, Campagna SR, Richardson LL.	PLoS One	10.1371/journal.pone.0108541	2014
Metabolism	Inhibitory effects of Bacillus probionts on growth and toxin production of Vibrio harveyi pathogens of shrimp.	Nakayama T, Lu H, Nomura N	Lett Appl Microbiol	10.1111/j.1472-765X.2009.02725.x	2009
Proteome	The Effect of Visible Light on Cell Envelope Subproteome during Vibrio harveyi Survival at 20 degrees C in Seawater.	Orruno M, Parada C, Kaberdin VR, Arana I	Microorganisms	10.3390/microorganisms9030594	2021
Pathogenicity	Biological and Genomic Characterization of a Novel Jumbo Bacteriophage, vB_VhaM_pir03 with Broad Host Lytic Activity against Vibrio harveyi.	Misol GN Jr, Kokkari C, Katharios P	Pathogens	10.3390/pathogens9121051	2020
	Antigenicity of hypothetical protein HP33 of Vibrio harveyi Y6 causing scale drop and muscle necrosis disease in Asian sea bass.	Kwankijudomkul A, Dong HT, Longyant S, Sithigorngul P, Khunrae P, Rattanarojpong T, Senapin S	Fish Shellfish Immunol	10.1016/j.fsi.2020.11.034	2020
Genetics	Complete genome sequence of a giant Vibrio bacteriophage VH7D.	Luo ZH, Yu YP, Jost G, Xu W, Huang XL	Mar Genomics	10.1016/j.margen.2015.10.005	2015
Genetics	Taxonomic revision of Harveyi clade bacteria (family Vibrionaceae) based on analysis of whole genome sequences.	Urbanczyk H, Ogura Y, Hayashi T	Int J Syst Evol Microbiol	10.1099/ijs.0.051110-0	2013
Phylogeny	Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios.	Moreira APB, Pereira N, Thompson FL	Int J Syst Evol Microbiol	10.1099/ijs.0.023606-0	2010
Metabolism	Pathogenic Vibrio harveyi, in contrast to non-pathogenic strains, intervenes with the p38 MAPK pathway to avoid an abalone haemocyte immune response.	Travers MA, Le Bouffant R, Friedman CS, Buzin F, Cougard B, Huchette S, Koken M, Paillard C	J Cell Biochem	10.1002/jcb.21990	2009
Transcriptome	Amplification and sequence analysis of the full length toxR gene in Vibrio harveyi.	Franco PF, Hedreyda CT	J Gen Appl Microbiol	10.2323/jgam.52.281	2006
Enzymology	Differential detection of vibrios pathogenic to shrimp by multiplex PCR.	Castroverde CD, San Luis BB, Monsalud RG, Hedreyda CT	J Gen Appl Microbiol	10.2323/jgam.52.273	2006
Genetics	Partial characterization of a novel bacteriophage of Vibrio harveyi isolated from shrimp culture ponds in Thailand.	Pasharawipas T, Thaikua S, Sriurairatana S, Ruangpan L, Direkbusarakum S, Manopvisetcharean J, Flegel TW	Virus Res	10.1016/j.virusres.2005.05.012	2005
Phylogeny	Molecular identification of pathogenic and nonpathogenic strains of Vibrio harveyi using PCR and RAPD.	Hernandez G, Olmos J	Appl Microbiol Biotechnol	10.1007/s00253-003-1451-z	2003
Metabolism	Assessment of fluorescent-labeled bacteria for evaluation of in vivo uptake of bacteria (Vibrio spp.) by crustacean larvae.	Soto-Rodriguez SA, Simoes N, Jones DA, Roque A, Gomez-Gil B	J Microbiol Methods	10.1016/s0167-7012(02)00149-5	2003
Pathogenicity	Susceptibility of different isolates of Vibrio harveyi to antibiotics.	Liu PC, Lee KK, Chen SN	Microbios		1997
	Anti-Biofilm Activity of a Hyaluronan-like Exopolysaccharide from the Marine Vibrio MO245 against Pathogenic Bacteria.	Champion M, Portier E, Vallee-Rehel K, Linossier I, Balnois E, Vignaud G, Moppert X, Hellio C, Fay F	Mar Drugs	10.3390/md20110728	2022
Phylogeny	Vibrio owensii sp. nov., isolated from cultured crustaceans in Australia.	Cano-Gomez A, Goulden EF, Owens L, Hoj L	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01850.x	2009

References

#8215	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19623
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38120	; Curators of the CIP;
#49288	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28584
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68369	Automatically annotated from API 20NE .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#119845	Collection of Institut Pasteur ; Curators of the CIP; CIP 103192
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio harveyi (DSM 19623, ATCC 14126, CCUG 28584)

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