-
Information on genomic background e.g. entries in nucleic sequence databass
Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #67770] |
Vibrio harveyi strain NCIMB1280T 16S ribosomal RNA gene, partial sequence |
AY750575 |
1436 |
|
669 tax ID |
[Ref.: #8215] |
V.harveyi 16S ribosomal RNA |
X56578 |
1485 |
|
669 tax ID |
[Ref.: #20218] |
Vibrio harveyi strain ATCC 14126 16S ribosomal RNA gene, partial sequence |
KC954162 |
845 |
|
669 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi strain NBRC 15634 16S ribosomal RNA gene, partial sequence. |
ON872250 |
811 |
|
669 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi gene for 16S rRNA, partial sequence, strain: NBRC 15634. |
AB680920 |
1477 |
|
669 tax ID |
* |
[Ref.: #20218] |
Vibrio harveyi 16S rRNA |
D11205 |
217 |
|
669 tax ID |
* |
[Ref.: #20218] |
Vibrio harveyi 16S rRNA |
D11254 |
214 |
|
669 tax ID |
* |
[Ref.: #20218] |
Vibrio harveyi VIB 295 16S ribosomal RNA gene, partial sequence |
AF426811 |
744 |
|
669 tax ID |
* |
[Ref.: #20218] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence |
AF426825 |
744 |
|
669 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426805 |
744 |
|
669 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426806 |
744 |
|
669 tax ID |
* |
[Ref.: #20218] |
Vibrio harveyi 16S rRNA |
D11303 |
191 |
|
669 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426807 |
745 |
|
174895 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426808 |
744 |
|
174898 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426809 |
745 |
|
174897 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426810 |
745 |
|
174896 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426812 |
744 |
|
174893 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426813 |
745 |
|
174886 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426815 |
744 |
|
174894 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426816 |
745 |
|
174888 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426817 |
744 |
|
174892 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426818 |
745 |
|
174899 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426819 |
744 |
|
175181 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426820 |
745 |
|
174889 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426821 |
745 |
|
174887 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426822 |
744 |
|
174891 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi ATCC 14126 16S ribosomal RNA gene, partial sequence. |
AF426823 |
744 |
|
174890 tax ID |
* |
[Ref.: #20218] |
V.harveyi (ATCC 14126T) gene for 16S ribosomal RNA |
X74706 |
1488 |
|
669 tax ID |
* |
[Ref.: #124043] |
Vibrio harveyi strain NBRC 15634 16S ribosomal RNA gene, partial sequence. |
OQ147504 |
467 |
|
669 tax ID |
* |
|
|
-
Availability in culture collections
External links
[Ref.: #8215] |
Culture collection no. |
DSM 19623, ATCC 14126, CCUG 28584, CECT 525, LMG 4044, NBRC 15634, NCMB 1280, JCM 33361, CIP 103192, IFO 15634, NCCB 80033, NCIMB 1280, NCTC 12970 |
[Ref.: #86262] |
SI-ID 5084
|
* |
 |
Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Metabolism |
Inhibitory effects of Bacillus probionts on growth and toxin production of Vibrio harveyi pathogens of shrimp. |
Nakayama T, Lu H, Nomura N |
Lett Appl Microbiol |
10.1111/j.1472-765X.2009.02725.x |
2009 |
* |
Proteome |
The Effect of Visible Light on Cell Envelope Subproteome during Vibrio harveyi Survival at 20 degrees C in Seawater. |
Orruno M, Parada C, Kaberdin VR, Arana I |
Microorganisms |
10.3390/microorganisms9030594 |
2021 |
* |
Pathogenicity |
Biological and Genomic Characterization of a Novel Jumbo Bacteriophage, vB_VhaM_pir03 with Broad Host Lytic Activity against Vibrio harveyi. |
Misol GN Jr, Kokkari C, Katharios P |
Pathogens |
10.3390/pathogens9121051 |
2020 |
* |
Genetics |
Complete genome sequence of a giant Vibrio bacteriophage VH7D. |
Luo ZH, Yu YP, Jost G, Xu W, Huang XL |
Mar Genomics |
10.1016/j.margen.2015.10.005 |
2015 |
* |
Genetics |
Taxonomic revision of Harveyi clade bacteria (family Vibrionaceae) based on analysis of whole genome sequences. |
Urbanczyk H, Ogura Y, Hayashi T |
Int J Syst Evol Microbiol |
10.1099/ijs.0.051110-0 |
2013 |
* |
Phylogeny |
Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios. |
Moreira APB, Pereira N, Thompson FL |
Int J Syst Evol Microbiol |
10.1099/ijs.0.023606-0 |
2010 |
* |
Phylogeny |
Vibrio owensii sp. nov., isolated from cultured crustaceans in Australia. |
Cano-Gomez A, Goulden EF, Owens L, Hoj L |
FEMS Microbiol Lett |
10.1111/j.1574-6968.2009.01850.x |
2009 |
* |
Metabolism |
Pathogenic Vibrio harveyi, in contrast to non-pathogenic strains, intervenes with the p38 MAPK pathway to avoid an abalone haemocyte immune response. |
Travers MA, Le Bouffant R, Friedman CS, Buzin F, Cougard B, Huchette S, Koken M, Paillard C |
J Cell Biochem |
10.1002/jcb.21990 |
2009 |
* |
Transcriptome |
Amplification and sequence analysis of the full length toxR gene in Vibrio harveyi. |
Franco PF, Hedreyda CT |
J Gen Appl Microbiol |
10.2323/jgam.52.281 |
2006 |
* |
Enzymology |
Differential detection of vibrios pathogenic to shrimp by multiplex PCR. |
Castroverde CD, San Luis BB, Monsalud RG, Hedreyda CT |
J Gen Appl Microbiol |
10.2323/jgam.52.273 |
2006 |
* |
Genetics |
Partial characterization of a novel bacteriophage of Vibrio harveyi isolated from shrimp culture ponds in Thailand. |
Pasharawipas T, Thaikua S, Sriurairatana S, Ruangpan L, Direkbusarakum S, Manopvisetcharean J, Flegel TW |
Virus Res |
10.1016/j.virusres.2005.05.012 |
2005 |
* |
Phylogeny |
Molecular identification of pathogenic and nonpathogenic strains of Vibrio harveyi using PCR and RAPD. |
Hernandez G, Olmos J |
Appl Microbiol Biotechnol |
10.1007/s00253-003-1451-z |
2003 |
* |
Metabolism |
Assessment of fluorescent-labeled bacteria for evaluation of in vivo uptake of bacteria (Vibrio spp.) by crustacean larvae. |
Soto-Rodriguez SA, Simoes N, Jones DA, Roque A, Gomez-Gil B |
J Microbiol Methods |
10.1016/s0167-7012(02)00149-5 |
2003 |
* |
Pathogenicity |
Susceptibility of different isolates of Vibrio harveyi to antibiotics. |
Liu PC, Lee KK, Chen SN |
Microbios |
|
1997 |
* |
|
Antigenicity of hypothetical protein HP33 of Vibrio harveyi Y6 causing scale drop and muscle necrosis disease in Asian sea bass. |
Kwankijudomkul A, Dong HT, Longyant S, Sithigorngul P, Khunrae P, Rattanarojpong T, Senapin S |
Fish Shellfish Immunol |
10.1016/j.fsi.2020.11.034 |
2020 |
* |
|
Anti-Biofilm Activity of a Hyaluronan-like Exopolysaccharide from the Marine Vibrio MO245 against Pathogenic Bacteria. |
Champion M, Portier E, Vallee-Rehel K, Linossier I, Balnois E, Vignaud G, Moppert X, Hellio C, Fay F |
Mar Drugs |
10.3390/md20110728 |
2022 |
* |
|
References
-
#8215 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 19623
|
-
-
-
#38120 |
; Curators of the CIP;
|
-
#49288 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 28584
|
-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#68368 |
Automatically annotated from API 20E .
|
-
#68369 |
Automatically annotated from API 20NE .
|
-
#68371 |
Automatically annotated from API 50CH acid .
|
-
#68382 |
Automatically annotated from API zym .
|
-
#86262 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID5084.1 )
|
-
#119845 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 103192
|
-
#124043 |
Isabel Schober, Julia Koblitz:
Data extracted from sequence databases, automatically matched based on designation and taxonomy .
|
-
-
- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
|
|