Name: Vibrio harveyi 1116b
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17264

Type strain:

Species: Vibrio harveyi

Strain Designation: 1116b

Culture col. no.: DSM 23069, ATCC 35084, CCUG 19116, LMG 7890, CIP 104172

Strain history: CIP <- 1994, R. Ruimy, CNRS, Villefrance/Mer, France, Vibrio carchariae <- D.J. Grimes and R.R. Colwell: strain 1116b

NCBI tax ID(s): 669 (species)

SI-ID 5058

LMG 7890, ATCC 35084, CCUG 19116, CIP 104172, NCIMB 12705, IFO 15632, CECT 4215, CCRC 14141, KCTC 2717, NBRC 15632, BCRC 14141, DSM 23069

Special Collections

Other strains from Vibrio harveyi

Section

When using BacDive for research please cite our paper

Vibrio harveyi 1116b is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from kidney of brown shark Carcharhinus plumbeus.

Gram-negative
motile
rod-shaped
aerobe
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio harveyi**
	Full Scientific Name (LPSN)	Vibrio harveyi (Johnson and Shunk 1936) Baumann et al. 1981

	Synonym	Vibrio carchariae
	Synonym	Vibrio trachuri
	Synonym	"Achromobacter* harveyi"*
	Synonym	Lucibacterium harveyi
	Synonym	Beneckea harveyi

Information on morphological and physiological properties Morphology

[Ref.: #119846]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %98.5
[Ref.: #125438]	Gram stain	negative Confidence in %100

[Ref.: #119846]	Cell shape	rod-shaped

[Ref.: #119846]	Motility	yes

Multimedia content

[Ref.: #16687]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16687]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16687]

Culture medium growth

[Ref.: #16687]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16687]

Culture medium composition

expand / minimize

[Ref.: #41717]

Culture medium

Marine agar (MA)

[Ref.: #41717]

Culture medium growth

[Ref.: #41717]

Culture medium composition

expand / minimize

[Ref.: #119846]

Culture medium

CIP Medium 13

[Ref.: #119846]

Culture medium growth

[Ref.: #119846]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #16687]		growth	28 °C
[Ref.: #41717]		growth	30 °C
[Ref.: #46964]		growth	30 °C
[Ref.: #119846]		growth	41 °C
[Ref.: #119846]	negative	growth	5 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #46964]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %92.4

[Ref.: #125439]

Ability of spore formation

no Confidence in %98.4

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #119846]		NaCl		growth	2-10	%
[Ref.: #119846]		NaCl	no	growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	arginine ChEBI	-	hydrolysis	* from API ID32E, API 20E
[Ref.: #68374]	cellobiose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #119846]	citrate ChEBI	+	carbon source
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68374]	D-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	D-galacturonic acid ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	D-glucose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	D-mannitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #119846]	glucose ChEBI	+	fermentation
[Ref.: #68374]	L-arabinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	L-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	L-rhamnose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #119846]	lactose ChEBI	-	fermentation
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68374]	lysine ChEBI	-	degradation	* from API ID32E
[Ref.: #68374]	malonate ChEBI	-	assimilation	* from API ID32E
[Ref.: #68374]	maltose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	myo-inositol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #119846]	nitrate ChEBI	+	reduction
[Ref.: #119846]	nitrite ChEBI	-	reduction
[Ref.: #68374]	ornithine ChEBI	-	degradation	* from API ID32E, API 20E
[Ref.: #68374]	palatinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	ribitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #119846]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68374]	sorbitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68374]	sucrose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68374]	trehalose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	tryptophan ChEBI	+	energy source	* from API ID32E, API 20E
[Ref.: #68374]	urea ChEBI	-	hydrolysis	* from API ID32E, API 20E
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119846]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite	Production
[Ref.: #119846]	indole ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68374]	indole ChEBI	yes	* from API ID32E, API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #119846]	acetoin ChEBI	-
[Ref.: #119846]	glucose ChEBI		+
[Ref.: #68368]	acetoin ChEBI	-			* from API 20E
[Ref.: #68374]	indole ChEBI			+	* from API ID32E, API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #119846]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68374]	alpha-galactosidase	-	3.2.1.22	* from API ID32E
[Ref.: #68374]	alpha-glucosidase	-	3.2.1.20	* from API ID32E
[Ref.: #68374]	alpha-maltosidase	-		* from API ID32E
[Ref.: #119846]	amylase	+
[Ref.: #68374]	arginine dihydrolase	-	3.5.3.6	* from API ID32E, API 20E
[Ref.: #119846]	beta-galactosidase	-	3.2.1.23
[Ref.: #68374]	beta-galactosidase	-	3.2.1.23	* from API ID32E, API 20E
[Ref.: #68374]	beta-glucosidase	-	3.2.1.21	* from API ID32E
[Ref.: #68374]	beta-glucuronidase	-	3.2.1.31	* from API ID32E
[Ref.: #119846]	catalase	+	1.11.1.6
[Ref.: #68368]	cytochrome oxidase	+	1.9.3.1	* from API 20E
[Ref.: #119846]	DNase	+
[Ref.: #119846]	gelatinase	+
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68374]	L-aspartate arylamidase	-	3.4.11.21	* from API ID32E
[Ref.: #68374]	lipase	+		* from API ID32E
[Ref.: #119846]	lysine decarboxylase	+	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68374]	lysine decarboxylase	-	4.1.1.18	* from API ID32E
[Ref.: #68374]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API ID32E
[Ref.: #119846]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #68374]	ornithine decarboxylase	-	4.1.1.17	* from API ID32E, API 20E
[Ref.: #119846]	oxidase	+
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #119846]	urease	+	3.5.1.5
[Ref.: #68374]	urease	-	3.5.1.5	* from API ID32E, API 20E
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #46964]	5938	-	-	+	-	-	-	-	-	+	-	-	+	+	-	-	-	+	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119846]	580	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	-	-	-	-	+	+	+	+	+	+	-	-	+	-

API® ID32E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Ornithine decarboxylaseODC	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Urease/urea hydrolysisURE	Acid from L-arabitolLARL	Acid from D-galacturonic acidGAT	Acid from 5-Ketogluconate5KG	LipaseLIP	Phenol red (Acidification)RP	beta-Glucosidasebeta GLU	Acid from D-mannitolMAN	Acid from maltoseMAL	Acid from D-adonitolADO	Acid from palatinosePLE	beta-Glucuronidasebeta GUR	MalonateMNT	Indole productionIND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta-Galactosidasebeta GAL	Acid from D-glucoseGLU	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	alpha-Glucosidasealpha GLU	alpha-Galactosidasealpha GAL	Acid from trehaloseTRE	Acid from L-rhamnoseRHA	Acid from inositolINO	Acid from cellobioseCEL	Acid from sorbitolSOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
[Ref.: #46964]	735	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16687]	Sample type/isolated from	kidney of brown shark Carcharhinus plumbeus
[Ref.: #16687]	Host species	Carcharhinus plumbeus
[Ref.: #16687]	Country	USA
[Ref.: #16687]	Country ISO 3 Code	USA
[Ref.: #16687]	Continent	North America

[Ref.: #46964]	Sample type/isolated from	Kidney of brown shark,Carcharhinus plumbeus

[Ref.: #119846]	Sample type/isolated from	Brown shark, kidney
[Ref.: #119846]	Geographic location (country and/or sea, region)	Baltimore, Maryland
[Ref.: #119846]	Country	United States of America
[Ref.: #119846]	Country ISO 3 Code	USA
[Ref.: #119846]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Tunicata
#Host Body-Site	#Urogenital tract	#Kidney

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X74693 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	1572
Soil Samples	65
Animal Samples	1045
Plant Samples	43
Total Samples	2725

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16687]	Pathogenicity (human)	yes, in single cases
[Ref.: #16687]	Pathogenicity (animal)	yes
[Ref.: #16687]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119846]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Vibrio harveyi 16S ribosomal RNA gene, partial sequence	HM771342	1470	GenBank ENA	669 tax ID	*
[Ref.: #20218]	Vibrio carchariae 16S rRNA	D11194	217	GenBank ENA	669 tax ID	*
[Ref.: #20218]	Vibrio carchariae 16S rRNA	D11243	215	GenBank ENA	669 tax ID	*
[Ref.: #20218]	Vibrio harveyi VIB 286 16S ribosomal RNA gene, partial sequence	AF426814	744	GenBank ENA	669 tax ID	*
[Ref.: #20218]	Vibrio carchariae 16S rRNA	D11292	191	GenBank ENA	669 tax ID	*
[Ref.: #20218]	Vibrio harveyi DNA, 16S-23S rRNA intergenic spacer and 23S rRNA, partial sequence, strain: ATCC 35084	AB255713	252	GenBank ENA	669 tax ID	*
[Ref.: #20218]	V.carchiariae (ATCC 35084T) gene for 16S ribosomal RNA	X74693	1465	GenBank ENA	669 tax ID	*
[Ref.: #20218]	Vibrio harveyi strain ATCC 35084 16S ribosomal RNA gene, partial sequence	GQ370528	1062	GenBank ENA	669 tax ID	*
[Ref.: #20218]	Vibrio harveyi ATCC:35084 16S ribosomal RNA gene, partial sequence	EU130475	1474	GenBank ENA	669 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio harveyi strain ATCC 35084	669.48	wgs	PATRIC	669 tax ID	*
[Ref.: #66792]	Vibrio carchariae ATCC 35084	2916716654	draft	JGI IMG/M	669 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio harveyi strain ATCC 35084 PATRIC: 669.48
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	95.251	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	84.314	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	63.272	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99.5	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	86.082	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio carchariae ATCC 35084 IMG: 2916716654
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	98.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	68
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	98.5
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	92.4

Availability in culture collections External links

[Ref.: #16687]

Culture collection no.

DSM 23069, ATCC 35084, CCUG 19116, LMG 7890, CIP 104172

[Ref.: #86263]

SI-ID 5058

Literature:

	Title	Authors	Journal	DOI	Year
Metabolism	Pathogenic Vibrio harveyi, in contrast to non-pathogenic strains, intervenes with the p38 MAPK pathway to avoid an abalone haemocyte immune response.	Travers MA, Le Bouffant R, Friedman CS, Buzin F, Cougard B, Huchette S, Koken M, Paillard C	J Cell Biochem	10.1002/jcb.21990	2009	*
	Photocatalytic, antiproliferative and antimicrobial properties of copper nanoparticles synthesized using Manilkara zapota leaf extract: A photodynamic approach.	Kiriyanthan RM, Sharmili SA, Balaji R, Jayashree S, Mahboob S, Al-Ghanim KA, Al-Misned F, Ahmed Z, Govindarajan M, Vaseeharan B	Photodiagnosis Photodyn Ther	10.1016/j.pdpdt.2020.102058	2020	*
	Characterization of abalone Haliotis tuberculata-Vibrio harveyi interactions in gill primary cultures.	Pichon D, Cudennec B, Huchette S, Djediat C, Renault T, Paillard C, Auzoux-Bordenave S	Cytotechnology	10.1007/s10616-013-9583-1	2013	*

References

#16687

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23069

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41717 ; Curators of the CIP;
#46964 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 19116

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#68374

Automatically annotated from API ID32E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86263

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5058.1 )

#119846 Collection of Institut Pasteur ; Curators of the CIP; CIP 104172

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

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Search for species Vibrio harveyi in external resources:
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Vibrio harveyi strain ATCC 35084

Vibrio carchariae ATCC 35084

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Change proposal