Salinivibrio sharmensis (DSM 18182, ATCC BAA-1319, JCM 19030)

Name: Salinivibrio sharmensis (DSM 18182, ATCC BAA-1319, JCM 19030)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17247

Type strain

Strain Designation B, BAG

Culture col. no. DSM 18182 ATCC BAA-1319 JCM 19030 B BAG

NCBI tax ID(s) 390883

Special Collections DSMZ JCM

Links

Salinivibrio sharmensis B is a mesophilic prokaryote that was isolated from mixture of sediment and water.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397771

JCM 19030,DSM 18182

@ref 20215

Last LPSN update 2025-12-16 09:51:02

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Salinivibrio

Species Salinivibrio sharmensis

Full scientific name Salinivibrio sharmensis Romano et al. 2011

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7414	SALINIVIBRIO SHARMENSIS MEDIUM (DSMZ Medium 1461)		Medium recipe at MediaDive	Name: SALINIVIBRIO SHARMENSIS MEDIUM (DSMZ Medium 1461) Composition: NaCl 100.0 g/l Agar 20.0 g/l Yeast extract 10.0 g/l Trisodium citrate 3.0 g/l Na2CO3 3.0 g/l KCl 2.0 g/l MgSO4 x 7 H2O 1.0 g/l MnCl2 x 4 H2O FeSO4 x 7 H2O Distilled water
7414	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7414	positive	growth	37	mesophilic
67770	positive	growth	35	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	91.2

Spore formation

@ref	Spore formation	Confidence
125439		93

Observation

67770

Observationquinones: Q-8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	-
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7414	mixture of sediment and water	Ras Mohammed Park, located at Sharm el-Sheikh (27°51'N 34°16'E)	Egypt	EGY	Africa
67770	Saline lake in Ras Mohammed Park		Egypt	EGY	Africa

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7414	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
67770	ASM199598v1 assembly for Salinivibrio sharmensis DSM 18182	contig	GCA_001995985	2791354969	390883	68.25

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7414	Salinivibrio sharmensis partial 16S rRNA gene, type strain BAGT	AM279734	1377		390883
124043	Salinivibrio sharmensis partial 16S rRNA gene, strain DSM 18182	LT627804	1008		390883

GC content

@ref	GC-content (mol%)	Method
7414	51	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salinivibrio sharmensis DSM 18182
NCBI: GCA_001995985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	93.00	no
125439	motility	BacteriaNetⓘ	yes	73.30	no
125439	gram_stain	BacteriaNetⓘ	negative	85.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft Genome Sequences of Salinivibrio proteolyticus, Salinivibrio sharmensis, Salinivibrio siamensis, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. vallismortis, and 29 New Isolates Belonging to the Genus Salinivibrio.	Lopez-Hermoso C, de la Haba RR, Sanchez-Porro C, Bayliss SC, Feil EJ, Ventosa A.	Genome Announc	10.1128/genomea.00244-17	2017
	CRISPR-Cas systems are present predominantly on mobile genetic elements in Vibrio species.	McDonald ND, Regmi A, Morreale DP, Borowski JD, Boyd EF.	BMC Genomics	10.1186/s12864-019-5439-1	2019
Phylogeny	Salinivibrio kushneri sp. nov., a moderately halophilic bacterium isolated from salterns.	Lopez-Hermoso C, de la Haba RR, Sanchez-Porro C, Ventosa A	Syst Appl Microbiol	10.1016/j.syapm.2017.12.001	2017
Phylogeny	Salinivibrio sharmensis sp. nov., a novel haloalkaliphilic bacterium from a saline lake in Ras Mohammed Park (Egypt).	Romano I, Orlando P, Gambacorta A, Nicolaus B, Dipasquale L, Pascual J, Giordano A, Lama L	Extremophiles	10.1007/s00792-010-0349-9	2011

References

#7414	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18182
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salinivibrio sharmensis (DSM 18182, ATCC BAA-1319, JCM 19030)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001995985

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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