Aliivibrio fischeri (DSM 507, ATCC 7744, JCM 18803)

Name: Aliivibrio fischeri (DSM 507, ATCC 7744, JCM 18803)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17248

Type strain

Strain Designation 398

Culture col. no. DSM 507 ATCC 7744 JCM 18803 NCMB 1281 CCUG 13450 15 more

NCBI tax ID(s) 1298605 668

Special Collections DSMZ CCUG JCM KCTC CIP

History <- ATCC <- F.H. Johnson (Achromobacter fischeri) DSM 507 <-- ATCC 7744 <-- F. H. Johnson. CIP <- 1988, NCIB <- 1965, ATCC <- F.J. Johnson, Achromobacter fischeri

Links

Aliivibrio fischeri 398 is an aerobe, Gram-negative, motile bacterium of the family Vibrionaceae.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13867

LMG 4414,ATCC 7744,CCUG 13450,CCUG 16305,CECT 524,DSM 507,NCMB 1281,NRRL B-761,CAIM 329,JCM18803,CIP 103206,NCIMB 1281,LMD 80.39,CIP 75.08,LMD 76.33,CCRC 12900,CIP 75.8,NCCB 76033,NCCB 80039,BCRC 12900,KCTC 12386,KCTC 12272,NRRL B-41164,VTT E-95625

@ref 20215

Last LPSN update 2026-02-09 11:22:10

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Aliivibrio

Species Aliivibrio fischeri

Full scientific name Aliivibrio fischeri (Beijerinck 1889) Urbanczyk et al. 2007

Synonyms (3)

Vibrio fischeri
Photobacterium fischeri
"Photobacterium fischeri"

BacDive ID	Other strains from **Aliivibrio fischeri** (7)	Type strain
17249	A. fischeri 395, DSM 2168, ATCC 14546, CCM 216, NCMB ...
17250	A. fischeri DSM 7151, CIP 105356, NRRL B-11177
100263	A. fischeri STI40142(IMET), INA6786/54, IMET 40142
143015	A. fischeri CCUG 16309, ATCC 33983
143016	A. fischeri CCUG 16312
143017	A. fischeri CCUG 16313
143018	A. fischeri CCUG 16314

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		99
125438	negative		99.917
119358	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
41758	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
119358	CIP Medium 13	Medium recipe at CIP
254	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
254	Vibrio fischeri medium as in ISO 11348-1:2007 (DSMZ Medium 1856)	Medium recipe provided by DSMZ
254	SEA WATER AGAR (DSMZ Medium 246)	Medium recipe at MediaDive	Name: SEA WATER AGAR (DSMZ Medium 246) Composition: Agar 20.0 g/l Peptone 10.0 g/l Beef extract 10.0 g/l Tap water Sea water

Culture temp

@ref	Growth	Type	Temperature (°C)
254	positive	growth	22
254	positive	growth	20
41758	positive	growth	25
45953	positive	growth	26
67770	positive	growth	22
119358	positive	growth	15-30
119358	negative	growth	5
119358	negative	growth	37
119358	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
45953	aerobe
119358	facultative anaerobe
125439	obligate aerobe	97.9

Spore formation

@ref	Spore formation	Confidence
125439		99.4

Compound production

254

Compoundluciferase

Halophily

@ref	Salt	Growth	Tested relation	Concentration
119358	NaCl	positive	growth	2-6 %
119358	NaCl		growth	0 %
119358	NaCl		growth	8 %
119358	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
119358	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
119358	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
119358	17234 ChEBI	glucose	-	fermentation
119358	17234 ChEBI	glucose	-	degradation
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
119358	17716 ChEBI	lactose	+	fermentation
68368	25094 ChEBI	lysine	+	degradation	from API 20E
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
119358	17632 ChEBI	nitrate	+	reduction
119358	17632 ChEBI	nitrate	+	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68368	17632 ChEBI	nitrate	+	reduction	from API 20E
119358	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
119358	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119358	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68369	35581 ChEBI	indole	from API 20NE
119358	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
119358	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-			from API 20E
119358	17234 ChEBI	glucose		-
68369	35581 ChEBI	indole			-	from API 20NE
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119358	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119358	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
119358	beta-galactosidase	-	3.2.1.23
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119358	caseinase	-	3.4.21.50
119358	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
119358	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119358	gamma-glutamyltransferase	-	2.3.2.2
119358	gelatinase	-
68369	gelatinase	-		from API 20NE
68368	gelatinase	-		from API 20E
119358	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119358	lipase	+
68382	lipase (C 14)	-		from API zym
119358	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119358	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
119358	oxidase	+
119358	phenylalanine ammonia-lyase	-	4.3.1.24
119358	protease	+
68382	trypsin	-	3.4.21.4	from API zym
119358	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
119358	tween esterase	-
119358	urease	+	3.5.1.5
68369	urease	+	3.5.1.5	from API 20NE
68368	urease	+	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
254	-	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
254	-	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
254	-	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
254	-	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
254	-	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119358	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
254	+	-	+	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+
254	+	-	+	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119358	not determinedn.d.	+	+	+	-	+	-	-	-	-	+	-	-	-	-	-	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	+	-	-	+	+	+	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
254	1	Risk group (German classification) According to TRBA 466
119358	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2398347v1 assembly for Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507	complete	GCA_023983475	668.195		1298605	90.48
66792	ASM1646433v1 assembly for Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507	scaffold	GCA_016464335	668.164	8117762056	1298605	37.6
66792	ASM1464739v1 assembly for Aliivibrio fischeri JCM 18803	scaffold	GCA_014647395	668.149		668	20.96
67770	ASM131262v1 assembly for Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507	contig	GCA_001312625	1298605.61	2734481910	1298605

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Vibrio fischeri isolate 7744 16S ribosomal RNA gene, partial sequence	AY292938	1227	668
20218	Vibrio fischeri strain ATCC 7744 16S ribosomal RNA gene, partial sequence	AY341436	1475	668
20218	Vibrio fischeri 16S rRNA	D11202	159	668
20218	Vibrio fischeri 16S rRNA	D11251	205	668
20218	Vibrio fischeri 16S rRNA	D11300	193	668
20218	V.fisheri (ATCC 7744T) gene for 16S ribosomal RNA	X74702	1467	668
20218	V.fischeri gamma subclass (NCMB 1281) gene for 16S rRNA	X70640	1486	668
124043	Aliivibrio wodanis isolate AV11/2007 16S ribosomal RNA gene, partial sequence.	EU257745	1405	668

GC content

@ref	GC-content (mol%)	Method
254	39.7
67770	39.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507
NCBI: GCA_016464335

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	65.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507 DSM 507
NCBI: GCA_023983475.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.92	no
125438	anaerobic	anaerobicⓘ	no	95.73	yes
125438	aerobic	aerobicⓘ	no	55.85	no
125438	spore-forming	spore-formingⓘ	no	86.98	no
125438	thermophilic	thermophileⓘ	no	97.46	no
125438	flagellated	motile2+ⓘ	yes	85.84	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	The quest for environmental analytical microbiology: absolute quantitative microbiome using cellular internal standards.	Wang C, Yang Y, Xu X, Wang D, Shi X, Liu L, Deng Y, Li L, Zhang T.	Microbiome	10.1186/s40168-024-02009-2	2025
	Characterization of bacteria colonizing the mucosal layer of the gastrointestinal tract of Atlantic salmon farmed in a warm water region.	Reid CE, Taylor RS, Bissett A, Nowak BF, Bowman JP.	Front Microbiol	10.3389/fmicb.2025.1564052	2025
	An improved detection and quantification method for the coral pathogen Vibrio coralliilyticus.	Wilson B, Muirhead A, Bazanella M, Huete-Stauffer C, Vezzulli L, Bourne DG.	PLoS One	10.1371/journal.pone.0081800	2013
Enzymology	Inter-Species Redox Coupling by Flavin Reductases and FMN-Dependent Two-Component Monooxygenases Undertaking Nucleophilic Baeyer-Villiger Biooxygenations.	Willetts A.	Microorganisms	10.3390/microorganisms11010071	2022
	Augmented photocatalytic degradation of Acetaminophen using hydrothermally treated g-C₃N₄ and persulfate under LED irradiation.	Gupta S, Gandhi J, Kokate S, Raikar LG, Kopuri VG, Prakash H.	Heliyon	10.1016/j.heliyon.2023.e16450	2023
	Time-Dependent Toxicities of Quorum Sensing Inhibitors to Aliivibrio fischeri and Bacillus subtilis.	Zhang Y, Song J, Wang T, Sun H, Lin Z, Zhang Y.	Dose Response	10.1177/1559325818822938	2019
Metabolism	Antibiotic Korormicin A Kills Bacteria by Producing Reactive Oxygen Species.	Maynard A, Butler NL, Ito T, da Silva AJ, Murai M, Chen T, Koffas MAG, Miyoshi H, Barquera B.	J Bacteriol	10.1128/jb.00718-18	2019
Phenotype	Identification of a Transcriptomic Network Underlying the Wrinkly and Smooth Phenotypes of Vibrio fischeri.	Chavez-Dozal A, Soto W, Nishiguchi MK.	J Bacteriol	10.1128/jb.00259-20	2021
	The devil is in the details: Variable impacts of season, BMI, sampling site temperature, and presence of insects on the post-mortem microbiome.	Tarone AM, Mann AE, Zhang Y, Zascavage RR, Mitchell EA, Morales E, Rusch TW, Allen MS.	Front Microbiol	10.3389/fmicb.2022.1064904	2022
	Improving the Bioactivity of Norfloxacin with Tablets Made from Paper.	Abdelkader A, Nallbati L, Keck CM.	Pharmaceutics	10.3390/pharmaceutics15020375	2023
Pathogenicity	Symbiont evolution during the free-living phase can improve host colonization.	Soto W, Travisano M, Tolleson AR, Nishiguchi MK.	Microbiology (Reading)	10.1099/mic.0.000756	2019
Enzymology	Comparative analysis of the lux operons in Aliivibrio logei KCh1 (a Kamchatka Isolate) and Aliivibrio salmonicida.	Manukhov IV, Khrul'nova SA, Baranova A, Zavilgelsky GB.	J Bacteriol	10.1128/jb.05320-11	2011
Phylogeny	Gene sequences of the pil operon reveal relationships between symbiotic strains of Vibrio fischeri.	Browne-Silva J, Nishiguchi MK.	Int J Syst Evol Microbiol	10.1099/ijs.0.65370-0	2008
	Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus.	Minich JJ, Petrus S, Michael JD, Michael TP, Knight R, Allen EE.	mSphere	10.1128/msphere.00401-20	2020
Enzymology	Salinity and temperature effects on physiological responses of Vibrio fischeri from diverse ecological niches.	Soto W, Gutierrez J, Remmenga MD, Nishiguchi MK.	Microb Ecol	10.1007/s00248-008-9412-9	2009
Metabolism	Cyclic AMP receptor protein regulates pheromone-mediated bioluminescence at multiple levels in Vibrio fischeri ES114.	Lyell NL, Colton DM, Bose JL, Tumen-Velasquez MP, Kimbrough JH, Stabb EV.	J Bacteriol	10.1128/jb.00751-13	2013
Metabolism	Heterogeneous response to a quorum-sensing signal in the luminescence of individual Vibrio fischeri.	Perez PD, Hagen SJ.	PLoS One	10.1371/journal.pone.0015473	2010
	Properties of Plant Extracts from Adriatic Maritime Zone for Innovative Food and Packaging Applications: Insights into Bioactive Profiles, Protective Effects, Antioxidant Potentials and Antimicrobial Activity	Babic P, Cvetnic T, Canak I, Dujmovic M, Semencic M, Supljika F, Vranjes Z, Debeaufort F, Benbettaieb N, Descours E, Kurek M.	Antioxidants (Basel)		2025
	Effect of Quinoline on the Phospholipid Profile of Curvularia lunata and Its Microbial Detoxification.	Felczak A, Zawadzka K, Bernat P, Nowak-Lange M, Lisowska K.	Molecules	10.3390/molecules27072081	2022
Pathogenicity	Microbial toxicity of methyl tert-butyl ether (MTBE) determined with fluorescent and luminescent bioassays.	Roslev P, Lentz T, Hesselsoe M.	Chemosphere	10.1016/j.chemosphere.2014.07.003	2015
Metabolism	Antimicrobial activity of heterotrophic bacterial communities from the marine sponge Erylus discophorus (Astrophorida, Geodiidae).	Graca AP, Bondoso J, Gaspar H, Xavier JR, Monteiro MC, de la Cruz M, Oves-Costales D, Vicente F, Lage OM.	PLoS One	10.1371/journal.pone.0078992	2013
	Marine Pseudovibrio sp. as a novel source of antimicrobials.	Crowley SP, O'Gara F, O'Sullivan O, Cotter PD, Dobson AD.	Mar Drugs	10.3390/md12125916	2014
	Improving survival and storage stability of bacteria recalcitrant to freeze-drying: a coordinated study by European culture collections.	Peiren J, Buyse J, De Vos P, Lang E, Clermont D, Hamon S, Begaud E, Bizet C, Pascual J, Ruvira MA, Macian MC, Arahal DR	Appl Microbiol Biotechnol	10.1007/s00253-015-6476-6	2015
Genetics	Identification of the cobalamin-dependent methionine synthase gene, metH, in Vibrio fischeri ATCC 7744 by sequencing using genomic DNA as a template.	Kasai S, Yamazaki T	Gene	10.1016/s0378-1119(01)00339-0	2001
Genetics	Identification and analysis of the sap genes from Vibrio fischeri belonging to the ATP-binding cassette gene family required for peptide transport and resistance to antimicrobial peptides.	Chen HY, Weng SF, Lin JW	Biochem Biophys Res Commun	10.1006/bbrc.1999.1506	2000
Enzymology	Identification of the genes encoding NAD(P)H-flavin oxidoreductases that are similar in sequence to Escherichia coli Fre in four species of luminous bacteria: Photorhabdus luminescens, Vibrio fischeri, Vibrio harveyi, and Vibrio orientalis.	Zenno S, Saigo K	J Bacteriol	10.1128/jb.176.12.3544-3551.1994	1994
Enzymology	Identification of the gene encoding the major NAD(P)H-flavin oxidoreductase of the bioluminescent bacterium Vibrio fischeri ATCC 7744.	Zenno S, Saigo K, Kanoh H, Inouye S	J Bacteriol	10.1128/jb.176.12.3536-3543.1994	1994
Genetics	Sequence of the luxD gene encoding acyltransferase of the lux operon from Photobacterium leiognathi.	Chao YF, Weng SF, Lin JW	Gene	10.1016/0378-1119(93)90606-4	1993
Genetics	Draft Genome Sequence of the Marine Bioluminescent Bacterium Aliivibrio fischeri ATCC 7744.	Low EKJ, Goh AEL, Logis J, Lee SW, Fatima A, Yap WS, Lim CSY	Microbiol Resour Announc	10.1128/mra.01117-21	2022
Metabolism	Enzymatic conversion of dehydrocoelenterazine to coelenterazine using FMN-bound flavin reductase of NAD(P)H:FMN oxidoreductase.	Inouye S, Nakamura M, Hosoya T	Biochem Biophys Res Commun	10.1016/j.bbrc.2021.11.089	2021
Cultivation	Impact of the freeze-drying process on product appearance, residual moisture content, viability, and batch uniformity of freeze-dried bacterial cultures safeguarded at culture collections.	Peiren J, Hellemans A, De Vos P	Appl Microbiol Biotechnol	10.1007/s00253-016-7359-1	2016
Pathogenicity	Broad-Host Range Gene Transporter Particles Produced by Aliivibrio fischeri.	Chiura HX, Uchiyama N, Kogure K	Microbes Environ	10.1264/jsme2.me09153	2009
Phylogeny	Reclassification of Vibrio fischeri, Vibrio logei, Vibrio salmonicida and Vibrio wodanis as Aliivibrio fischeri gen. nov., comb. nov., Aliivibrio logei comb. nov., Aliivibrio salmonicida comb. nov. and Aliivibrio wodanis comb. nov.	Urbanczyk H, Ast JC, Higgins MJ, Carson J, Dunlap PV	Int J Syst Evol Microbiol	10.1099/ijs.0.65081-0	2007
Genetics	Identification and characteristic analysis of the ampC gene encoding beta-lactamase from Vibrio fischeri.	Weng SF, Chao YF, Lin JW	Biochem Biophys Res Commun	10.1016/j.bbrc.2003.12.171	2004
Metabolism	Occurrence of P-flavin binding protein in Vibrio fischeri and properties of the protein.	Kasai S	J Biochem	10.1093/oxfordjournals.jbchem.a022450	1999
Genetics	Identification and analysis of the regulatory region R&R* with the cnf1 gene encoding the cytotoxic necrotizing factor type 1 that closely links to the lux regulon of Vibrio fischeri.	Lin JW, Chen LM, Chen HY, Weng SF	Biochem Biophys Res Commun	10.1006/bbrc.1998.9325	1998
Enzymology	Crystallization and preliminary crystallographic analysis of the major NAD(P)H: FMN oxidoreductase of Vibrio fischeri ATCC 7744.	Koike H, Sasaki H, Tanokura M, Zenno S, Saigo K	J Struct Biol	10.1006/jsbi.1996.0070	1996
Enzymology	Stereospecificity of hydride transfer and substrate specificity for FMN-containing NAD(P)H-flavin oxidoreductase from the luminescent bacterium, Vibrio fischeri ATCC 7744.	Inouye S, Nakamura H	Biochem Biophys Res Commun	10.1006/bbrc.1994.2661	1994
Enzymology	NAD(P)H-flavin oxidoreductase from the bioluminescent bacterium, Vibrio fischeri ATCC 7744, is a flavoprotein.	Inouye S	FEBS Lett	10.1016/0014-5793(94)00528-1	1994
Enzymology	Nucleotide sequence of the luxC gene encoding fatty acid reductase of the lux operon from Photobacterium leiognathi.	Lin JW, Chao YF, Weng SF	Biochem Biophys Res Commun	10.1006/bbrc.1993.1219	1993
Enzymology	Physical and functional maps of the luminescence gene cluster in an autoinducer-deficient Vibrio fischeri strain isolated from a squid light organ.	Gray KM, Greenberg EP	J Bacteriol	10.1128/jb.174.13.4384-4390.1992	1992
Genetics	Use of regulated cell lysis in a lethal genetic selection in Escherichia coli: identification of the autoinducer-binding region of the LuxR protein from Vibrio fischeri ATCC 7744.	Shadel GS, Young R, Baldwin TO	J Bacteriol	10.1128/jb.172.7.3980-3987.1990	1990
Genetics	Identification of the operator of the lux regulon from the Vibrio fischeri strain ATCC7744.	Devine JH, Shadel GS, Baldwin TO	Proc Natl Acad Sci U S A	10.1073/pnas.86.15.5688	1989
Genetics	The complete nucleotide sequence of the lux regulon of Vibrio fischeri and the luxABN region of Photobacterium leiognathi and the mechanism of control of bacterial bioluminescence.	Baldwin TO, Devine JH, Heckel RC, Lin JW, Shadel GS	J Biolumin Chemilumin	10.1002/bio.1170040145	1989
Enzymology	Interaction between luciferases from various species of bioluminescent bacteria and the yellow fluorescent protein of Vibrio fischeri strain Y-1.	Daubner SC, Baldwin TO	Biochem Biophys Res Commun	10.1016/0006-291x(89)91368-5	1989
Enzymology	Functional identification of the fatty acid reductase components encoded in the luminescence operon of Vibrio fischeri.	Boylan M, Graham AF, Meighen EA	J Bacteriol	10.1128/jb.163.3.1186-1190.1985	1985
Genetics	Complete Genome Sequence of the Type Strain Aliivibrio fischeri DSM 507.	Papaioannou KK, Hollensteiner J, Witte JKH, Poehlein A, Daniel R	Microbiol Resour Announc	10.1128/mra.00801-22	2022
	Characterization of a facultatively psychrophilic bacterium, vibrio rumoiensis sp. nov., that exhibits high catalase activity	Yumoto I, Iwata H, Sawabe T, Ueno K, Ichise N, Matsuyama H, Okuyama H, Kawasaki K.	Appl Environ Microbiol	10.1128/aem.65.1.67-72.1999	1999

References

#254	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 507
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41758	; Curators of the CIP;
#45953	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 13450
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#119358	Collection of Institut Pasteur ; Curators of the CIP; CIP 103206
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aliivibrio fischeri (DSM 507, ATCC 7744, JCM 18803)

Name and taxonomic classification

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Culture and growth conditions

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Physiology and metabolism

Oxygen tolerance

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Halophily

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