Aliivibrio fischeri 398 | Type strain | DSM 507, ATCC 7744, JCM 18803, NCMB 1281, CCUG 13450, CAIM 329, LMG 4414, CIP 103206, NCCB 80039

Strain identifier

BacDive ID: 17248

Type strain:

Species: Aliivibrio fischeri

Strain Designation: 398

Culture col. no.: DSM 507, ATCC 7744, JCM 18803, NCMB 1281, CCUG 13450, CAIM 329, LMG 4414, CIP 103206, NCCB 80039

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #254]	Domain	Bacteria
[Ref.: #254]	Phylum	Proteobacteria
[Ref.: #254]	Class	Gammaproteobacteria
[Ref.: #254]	Order	Vibrionales, not validated
[Ref.: #254]	Family	Vibrionaceae
[Ref.: #254]	Genus	Aliivibrio
[Ref.: #254]	Species	Aliivibrio fischeri
[Ref.: #254]	Full Scientific Name	Aliivibrio fischeri (Beijerinck 1889) Urbanczyk et al. 2007
[Ref.: #254]	Strain Designation	398
[Ref.: #254]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	19-11-2019 (DD-MM-YYYY)
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Gammaproteobacteria		Int. J. Syst. Evol. Microbiol. 55:2235
[Ref.: #20215]	Family	Vibrionaceae		Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Genus	Aliivibrio	gen. nov. (VP)	Int. J. Syst. Evol. Microbiol. 57:2823*
[Ref.: #20215]	Species	Aliivibrio fischeri	comb. nov. (VP)	Int. J. Syst. Evol. Microbiol. 57:2823*
[Ref.: #20215]	Full Scientific Name	Aliivibrio fischeri (Beijerinck 1889) Urbanczyk et al. 2007

[Ref.: #20215]	Synonym	Photobacterium fischeri
[Ref.: #20215]	Synonym	Vibrio fischeri

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #254]

Name of produced compound

luciferase

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #254]	7501	-	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #254]	6635	-	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #254]	6577	-	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #254]	7654	-	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #254]	9375	+	-	+	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+
[Ref.: #254]	9372	+	-	+	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+

[Ref.: #45953]

Oxygen tolerance

aerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #254]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c), 22°C

[Ref.: #254]

Culture medium growth

[Ref.: #254]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #41758]

Culture medium

MEDIUM 13 - Marine agar

[Ref.: #41758]

Culture medium growth

[Ref.: #41758]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #254]	growth	22 ̊C
[Ref.: #41758]	growth	25 ̊C
[Ref.: #45953]	growth	26 ̊C

[Ref.: #254]	Temperature range	psychrophilic
[Ref.: #41758]	Temperature range	mesophilic
[Ref.: #45953]	Temperature range	mesophilic

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #254]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #254]

GC-content

39.7 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri fldA gene for flavodoxin 1, complete cds	AB039838		917	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri xerD, fldB genes for site-specific recombinase, flavodoxin 2, partial and complete cds	AB039839		1009	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri gene for cobalamin-dependent methionine synthase, Na+/H+ antiporter and aspartokinase III, partial and complete cds	AB039955		4155	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri fur and glnS genes for ferric uptake regulator and glutaminyl-tRNA synthetase, complete and partial cds	AB056119		1427	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri rib operon region, partial and complete cds	AB076605		5232	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri genes for LuxS and others, partial and complete cds	AB083335		3497	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri hpt, luxR2, tnpB genes for hypoxanthine ribosyl transferase, transcriptional regulator, transposase, complete cds	AB086190		2694	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri thiL, pgpA, luxP, luxQ, dxs, ispA genes for thiamine monophosphate kinase, phosphatidylglycerophosphatase A, bioluminescence regulatory protein, bioluminescence regulatory protein, 1-deoxyxylulose-5-phosphate synthase, geranyltranstransferase, complete and partial CDS	AB086408		7866	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri pfs, cbiB genes for MTA/SAH nucleosidase, cobalamin biosynthesis protein CbiB, complete and partial cds	AB087500		1496	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Aliivibrio fischeri luxMUp2, luxMUp1, luxM, luxN, luxNDn1, luxNDn2 genes, partial and complete cds	AB090807		6583	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri genes for excision nuclease subunit B, LuxO, LuxU, hypothetical protein, complete cds	AB103539		5262	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri gene, lux operon downstream region, partial and complete cds	AB105805		5884	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri genes for LuxR protein, hypothetical proteins, putative carboxypeptidase G2, partial and complete cds	AB107370		7898	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri cytotoxic necrotizing factor 1 (cnf1) gene, partial cds	AF023157		1285	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri chitinase A (chiA) gene, partial cds	AF059495		216	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri SapD (sapD) and SapF (sapF) genes, partial cds	AF178651		479	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri isolate 7744 16S ribosomal RNA gene, partial sequence	AY292938	16S	1227	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain ATCC 7744 lux operon, complete sequence	AY341062		3191	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain ATCC 7744 16S ribosomal RNA gene, partial sequence	AY341436	16S	1475	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain ATCC 7744 DNA gyrase subunit B (gyrB) gene, partial cds	AY455874		1213	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri 16S rRNA	D11202	16S	159	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri 16S rRNA	D11251	16S	205	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri 16S rRNA	D11300	16S	193	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri gene for NAD(P)H-flavin oxidoreductase, complete cds	D17743		929	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Vibrio fischeri fre gene for NAD(P)H-flavin reductase, complete cds	D17744		1121	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain ATCC 7744 pilD gene, complete sequence	DQ207634		871	668	*
[Ref.: #20218]	INSDC Sequence	A genomic DNA encoding an enzyme with flavin nucleotide and nitro-group reducing activities	E06567		657	668	*
[Ref.: #20218]	INSDC Sequence	A genomic DNA encoding an enzyme with flavin nucleotide and nitro-group reducing activities	E06568		929	668	*
[Ref.: #20218]	INSDC Sequence	A genomic DNA encoding an enzyme with flavin nucleotide and nitro-group reducing activities	E06569		657	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain ATCC 7744 glyceraldehyde-3-phosphate dehydrogenase (gapA) gene, partial cds	EF415488		774	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain ATCC 7744 uridylate kinase (pyrH) gene, partial cds	EF415528		604	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain ATCC 7744 recombinase A (recA) gene, partial cds	EF415542		797	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain ATCC 7744 DNA-directed RNA polymerase alpha subunit (rpoA) gene, partial cds	EF415578		928	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain ATCC 7744 RNA polymerase sigma factor (rpoD) gene, partial cds	EF415594		838	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain ATCC 7744 RecA (recA) gene, partial cds	EU907941		531	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain ATCC 7744 malate dehydrogenase (mdh) gene, partial cds	EU907965		783	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain ATCC 7744 catalase (katA) gene, partial cds	EU907989		789	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aliivibrio fischeri strain ATCC 7744 recombinase A (recA) gene, partial cds	JF509753		690	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aliivibrio fischeri strain ATCC 7744 C8 HSL autoinducer synthase (ainS) gene, partial cds	JF509797		780	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aliivibrio fischeri strain ATCC 7744 dihydroorotase (pyrC) gene, partial cds	JF509855		882	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aliivibrio fischeri strain ATCC 7744 luciferase alpha chain (luxA) gene, partial cds	JF509899		870	668	*
[Ref.: #20218]	INSDC Sequence	V.fischeri regulatory protein (luxR), autoinducer (luxI) genes, complete cds, and luxC gene, 5' end	M19039		1684	668	*
[Ref.: #20218]	INSDC Sequence	V.fischeri luxR transcriptional activator gene, clone PVFB1, complete cds	M25752		773	668	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio fischeri (ATCC 7744) 5S rRNA	X02253		120	668	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	V.fischeri luxG gene and orfV	X70289		1397	668	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	V.fisheri (ATCC 7744T) gene for 16S ribosomal RNA	X74702	16S	1467	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain CIP 103206 large subunit ribosomal protein L20 (rplT) gene, partial cds	AF324941		307	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain CIP 103206 transposon super-integron InVfi site-specific recombinase IntIA (intIA) gene, complete cds, and unknown genes	AY014400		3028	668	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio fischeri partial rpoB gene for RNA polymerase beta subunit, strain DSM 507	FN423813		871	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aliivibrio fischeri strain DSM 507 rod shape-determining protein MreB (mreB) gene, partial cds	JF815027		1041	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Aliivibrio fischeri strain DSM 507 cell division protein FtsA (ftsA) gene, partial cds	JF893445		462	668	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio fischeri partial mRNA for recombination-repair protein (recA gene), type strain LMG 4414T	AJ580909		579	668	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio fischeri partial recA gene, strain LMG 4414T	AJ842417		797	668	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio fischeri partial rpoA gene for RNA polymerase alpha-subunit, strain LMG 4414T	AJ842604		928	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain LMG 4414 ATPase (atpA) gene, partial cds	EF601271		1209	668	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Vibrio fischeri partial cpn60 gene for chaperonin 60 protein, strain NCMB 1281	AM235730		556	668	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	V.fischeri gamma subclass (NCMB 1281) gene for 16S rRNA	X70640	16S	1486	668	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Vibrio fischeri strain VIB 291 VHH/TLH hemolysin gene, partial cds	DQ839418		1059	668	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	EST1014513 FvI Fusarium verticillioides cDNA clone FVIB291, mRNA sequence	DR624385		743	117187	*

Availability in culture collectionsStrain availability

[Ref.: #254]

Culture collection no.

DSM 507, ATCC 7744, JCM 18803, NCMB 1281, CCUG 13450, CAIM 329, LMG 4414, CIP 103206, NCCB 80039

[Ref.: #254]

Strain history

<- ATCC <- F.H. Johnson (Achromobacter fischeri)

[Ref.: #20218]

Associated Passport(s) in StrainInfo

54096, 54090, 54098

References

#254	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 507

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41758 ; Curators of the CIP;
#45953 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 13450
* These References are textmined

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