Aliivibrio fischeri 398 | Type strain | DSM 507, ATCC 7744, JCM 18803, NCMB 1281, CCUG 13450, CAIM 329, LMG 4414, CIP 103206, NCCB 80039

Strain identifier

BacDive ID: 17248

Type strain:

Species: Aliivibrio fischeri

Strain Designation: 398

Culture col. no.: DSM 507, ATCC 7744, JCM 18803, NCMB 1281, CCUG 13450, CAIM 329, LMG 4414, CIP 103206, NCCB 80039

Strain history: <- ATCC <- F.H. Johnson (Achromobacter fischeri)

Section

Name and taxonomic classification
Culture and growth conditions
Physiology and metabolism
Safety information
Sequence information

External links

Aliivibrio fischeri 398 is an aerobe, psychrophilic bacterium of the family Vibrionaceae.

aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Proteobacteria
	Class	Gammaproteobacteria
	Order	Vibrionales
	Family	Vibrionaceae
	Genus	Aliivibrio
	Species	Aliivibrio fischeri
	Full Scientific Name (PNU)	Aliivibrio fischeri (Beijerinck 1889) Urbanczyk et al. 2007

	Synonym	Vibrio fischeri
	Synonym	Photobacterium fischeri

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #254]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)

[Ref.: #254]

Culture medium growth

[Ref.: #254]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #41758]

Culture medium

Marine agar (MA)

[Ref.: #41758]

Culture medium growth

[Ref.: #41758]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #254]	growth	22 ̊C
[Ref.: #41758]	growth	25 ̊C
[Ref.: #45953]	growth	26 ̊C

[Ref.: #254]	Temperature range	psychrophilic
[Ref.: #41758]	Temperature range	mesophilic
[Ref.: #45953]	Temperature range	mesophilic

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #45953]

Oxygen tolerance

aerobe

[Ref.: #254]

Name of produced compound

luciferase

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #254]	10571	-	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #254]	10417	-	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #254]	9552	-	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #254]	9496	-	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #254]	13643	+	-	+	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+
[Ref.: #254]	13640	+	-	+	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #254]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Vibrio fischeri isolate 7744 16S ribosomal RNA gene, partial sequence	AY292938	1227	ENA	668 tax ID	*
[Ref.: #20218]	Vibrio fischeri strain ATCC 7744 16S ribosomal RNA gene, partial sequence	AY341436	1475	ENA	668 tax ID	*
[Ref.: #20218]	Vibrio fischeri 16S rRNA	D11202	159	ENA	668 tax ID	*
[Ref.: #20218]	Vibrio fischeri 16S rRNA	D11251	205	ENA	668 tax ID	*
[Ref.: #20218]	Vibrio fischeri 16S rRNA	D11300	193	ENA	668 tax ID	*
[Ref.: #20218]	V.fisheri (ATCC 7744T) gene for 16S ribosomal RNA	X74702	1467	ENA	668 tax ID	*
[Ref.: #20218]	V.fischeri gamma subclass (NCMB 1281) gene for 16S rRNA	X70640	1486	ENA	668 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aliivibrio fischeri FQ-A001	GCA_004359415	contig	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri ES401	GCA_004685055	contig	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri 5F97	GCA_001690915	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.4.2	GCA_009727845	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.1.2	GCA_009728085	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.2.1	GCA_009727955	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri etasm.1.1	GCA_009727625	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.9.2	GCA_009727645	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.6.1	GCA_009727735	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri etasm.2.1	GCA_009727615	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.6.2	GCA_009727745	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.2.2	GCA_009727925	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri MB15A5	GCA_001640525	contig	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.11.2	GCA_009727975	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.3.1	GCA_009727945	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri VCW2E2	GCA_001029395	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.9.1	GCA_009727605	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.11.1	GCA_009727995	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.7.1	GCA_009727755	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri MB15A4	GCA_001640455	contig	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.1.1	GCA_009728065	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.3.2	GCA_009727905	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri 5LC	GCA_000985635	contig	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri KB1A98	GCA_001640325	contig	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.5.1t	GCA_009727835	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.5.1o	GCA_009727875	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri VLS2	GCA_001640545	contig	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.8.7	GCA_009727685	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.7.2	GCA_009727725	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri KB2B1	GCA_001640305	contig	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri MB13B1	GCA_001640415	contig	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri ES213	GCA_001640315	contig	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri MB13B3	GCA_001640465	contig	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri lpeal.1.1	GCA_009727585	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri Mb11B1	GCA_001640385	contig	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri KB4B5	GCA_001640505	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri MB14A3	GCA_001640375	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri MB13B2	GCA_001640445	contig	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri cmult.1.2	GCA_009728075	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.5.2	GCA_009727805	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.10.1	GCA_009728045	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri 5F146	GCA_001691015	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri 5F7	GCA_001730155	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri cmult.1.1	GCA_009728125	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri ZF25	GCA_001730145	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri 5F33	GCA_001690925	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri lpeal.1.2	GCA_009727525	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri ZF47	GCA_001691135	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri 5F306	GCA_001690945	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri FF227	GCA_001691095	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.4.1	GCA_009727825	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri ZF73	GCA_001691105	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri 5F23	GCA_001690975	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri NBRC 101058	GCA_007989845	contig	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.10.3	GCA_009728025	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri emors.8.2	GCA_009727705	scaffold	GenBank	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri JCM 18803	GCA_001312625	contig	GenBank	1298605 tax ID
[Ref.: #66792]	Aliivibrio fischeri JCM 18803	1298605.61	wgs	PATRIC	1298605 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain 5F146	668.85	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain 5F23	668.84	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain 5F306	668.83	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain 5F33	668.82	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain 5F7	668.93	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain 5F97	668.81	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain 5LC	668.66	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain CG103	668.100	plasmid	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain ES213	668.70	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain ES213	668.99	plasmid	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain ES401	668.115	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain ES657	668.101	plasmid	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain FF227	668.90	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain FQ-A001	668.114	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain KB1A-97	668.102	plasmid	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain KB1A98	668.71	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain KB2B1	668.69	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain KB4B5	668.78	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain MB13B1	668.74	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain MB13B2	668.75	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain MB13B3	668.77	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain MB14A3	668.72	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain MB15A4	668.76	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain MB15A5	668.79	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain Mb11B1	668.73	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain NBRC 101058	668.116	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain VCW2E2	668.67	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain VLS2	668.80	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain ZF25	668.92	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain ZF47	668.113	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain ZF73	668.91	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain cmult.1.1	668.143	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain cmult.1.2	668.144	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.1.1	668.142	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.1.2	668.145	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.10.1	668.146	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.10.3	668.138	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.11.1	668.139	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.11.2	668.140	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.2.1	668.127	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.2.2	668.131	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.3.1	668.129	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.3.2	668.133	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.4.1	668.137	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.4.2	668.132	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.5.1o	668.130	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.5.1t	668.134	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.5.2	668.135	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.6.1	668.125	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.6.2	668.128	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.7.1	668.136	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.7.2	668.124	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.8.2	668.118	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.8.7	668.117	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.9.1	668.123	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain emors.9.2	668.120	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain etasm.1.1	668.121	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain etasm.2.1	668.122	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain lpeal.1.1	668.119	wgs	PATRIC	668 tax ID
[Ref.: #66792]	Aliivibrio fischeri strain lpeal.1.2	668.126	wgs	PATRIC	668 tax ID

[Ref.: #254]

GC-content

39.7 mol%

Availability in culture collectionsExternal links

[Ref.: #254]

Culture collection no.

DSM 507, ATCC 7744, JCM 18803, NCMB 1281, CCUG 13450, CAIM 329, LMG 4414, CIP 103206, NCCB 80039

[Ref.: #20218]

Associated Passport(s) in StrainInfo

54096, 54090, 54098

References

#254	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 507

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41758 ; Curators of the CIP;
#45953 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 13450

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

Change proposal

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