Name: Salinivibrio siamensis ND1-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17246

Type strain:

Species: Salinivibrio siamensis

Strain Designation: ND1-1

Culture col. no.: DSM 26187, JCM 14472, PCU 301, TISTR 1810

Strain history: S. Tanasupawat; Chulalongkorn Univ., Thailand; ND1-1.

NCBI tax ID(s): 414286 (species)

SI-ID 399107

DSM 26187

Section

Salinivibrio siamensis ND1-1 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from fermented fish .

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Salinivibrio*
	Species	**Salinivibrio siamensis**
	Full Scientific Name (LPSN)	Salinivibrio siamensis Chamroensaksri et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #28927]	Gram stain	negative

[Ref.: #28927]	Cell length	5 µm

[Ref.: #28927]	Cell width	0.45 µm

[Ref.: #28927]	Cell shape	rod-shaped

[Ref.: #28927]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18179]

Culture medium

LENTIBACILLUS MEDIUM (DSMZ Medium 1449)

[Ref.: #18179]

Culture medium growth

[Ref.: #18179]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18179]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18179]	growth	37 °C
[Ref.: #28927]	growth	10-47 °C
[Ref.: #28927]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #18179]	Temperature range	mesophilic
[Ref.: #28927]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #28927]			optimum	8
[Ref.: #28927]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #28927]

Oxygen tolerance

anaerobe

[Ref.: #28927]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #28927]		NaCl		growth	01-22	%
[Ref.: #28927]		NaCl		optimum	9.5	%

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28927]	alanine ChEBI	+	carbon source
[Ref.: #28927]	fructose ChEBI	+	carbon source
[Ref.: #28927]	galactose ChEBI	+	carbon source
[Ref.: #28927]	gelatin ChEBI	+	carbon source
[Ref.: #28927]	glucose ChEBI	+	carbon source
[Ref.: #28927]	glycerol ChEBI	+	carbon source
[Ref.: #28927]	glycine ChEBI	+	carbon source
[Ref.: #28927]	maltose ChEBI	+	carbon source
[Ref.: #28927]	mannitol ChEBI	+	carbon source
[Ref.: #28927]	mannose ChEBI	+	carbon source
[Ref.: #28927]	nitrate ChEBI	+	reduction
[Ref.: #28927]	propionate ChEBI	+	carbon source
[Ref.: #28927]	pyruvate ChEBI	+	carbon source
[Ref.: #28927]	ribose ChEBI	+	carbon source
[Ref.: #28927]	succinate ChEBI	+	carbon source
[Ref.: #28927]	sucrose ChEBI	+	carbon source
[Ref.: #28927]	trehalose ChEBI	+	carbon source
[Ref.: #28927]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #28927]	acid phosphatase	+	3.1.3.2
[Ref.: #28927]	alkaline phosphatase	+	3.1.3.1
[Ref.: #28927]	catalase	+	1.11.1.6
[Ref.: #28927]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18179]	Sample type/isolated from	fermented fish (pla-ra)
[Ref.: #18179]	Geographic location (country and/or sea, region)	Nakornnayok province
[Ref.: #18179]	Country	Thailand
[Ref.: #18179]	Country ISO 3 Code	THA
[Ref.: #18179]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Fermented fish (pla-ra) in Thailand
[Ref.: #67770]	Host species	pla-ra
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Host	#Fishes	-
#Engineered	#Food production	#Fermented

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18179]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18179]	Salinivibrio siamensis gene for 16S ribosomal RNA, partial sequence	AB285018	1487	ENA	414286 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Salinivibrio siamensis JCM 14472	GCA_001996005	contig	GenBank	414286 tax ID
[Ref.: #66792]	Salinivibrio siamensis JCM 14472	2791354968	draft	JGI IMG/M	414286 tax ID	*

[Ref.: #18179]	GC-content	49.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #28927]	GC-content	49 mol%
[Ref.: #67770]	GC-content	49 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #18179]

Culture collection no.

DSM 26187, JCM 14472, PCU 301, TISTR 1810

[Ref.: #86244]

SI-ID 399107

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinivibrio sharmensis sp. nov., a novel haloalkaliphilic bacterium from a saline lake in Ras Mohammed Park (Egypt).	Romano I, Orlando P, Gambacorta A, Nicolaus B, Dipasquale L, Pascual J, Giordano A, Lama L	Extremophiles	10.1007/s00792-010-0349-9	2011	*
Phylogeny	Salinivibrio siamensis sp. nov., from fermented fish (pla-ra) in Thailand.	Chamroensaksri N, Tanasupawat S, Akaracharanya A, Visessanguan W, Kudo T, Itoh T	Int J Syst Evol Microbiol	10.1099/ijs.0.001768-0	2009	*

References

#18179

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26187

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28927

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25366 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#86244

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399107.1 )

#25366

IJSEM 880 2009 ( DOI 10.1099/ijs.0.001768-0 , PubMed 19329624 )

* These data were automatically processed and therefore are not curated

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