Name: Bifidobacterium thermophilum P2-91
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1721

Type strain:

Species: Bifidobacterium thermophilum

Strain Designation: P2-91

Culture col. no.: DSM 20210, ATCC 25525, CIP 105420, CCUG 34983, JCM 1207, BCRC 14669, CGMCC 1.2235, HAMBI 111, KCTC 3225, LMG 11573, LMG 21813, NCFB 2253, NCIMB 702253, ISL 118

Strain history: CIP <- 1998, DSM <- T. Mitsuoka: strain P2-91

NCBI tax ID(s): 1437596 (strain), 33905 (species)

SI-ID 217569

LMG 11573, ATCC 25525, CCUG 34983, DSM 20210, NCFB 2253, CIP 105420, JCM 1207, CCRC 14669, NCIMB 702253, NCDO2253, KCTC 3225, AS 1.2235, LMG 21813, BCRC 14669, HAMBI 111, CGMCC 1.2596, CGMCC 1.2235, AS 1.2596

Special Collections

Other strains from Bifidobacterium thermophilum

Section

Bifidobacterium thermophilum P2-91 is an anaerobe, Gram-positive bacterium that was isolated from pig faeces.

Gram-positive
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium thermophilum**
	Full Scientific Name (LPSN)	Bifidobacterium thermophilum corrig. Mitsuoka 1969 (Approved Lists 1980)

Synonym

Bifidobacterium thermophilium

Information on morphological and physiological properties Morphology

[Ref.: #123507]	Gram stain	negative

[Ref.: #123507]	Cell shape	rod-shaped

[Ref.: #123507]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8479]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #8479]

Culture medium growth

[Ref.: #8479]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8479]

Culture medium composition

expand / minimize

[Ref.: #39289]

Culture medium

MEDIUM 45 - for Columbia agar with sheep blood

[Ref.: #39289]

Culture medium growth

[Ref.: #39289]

Culture medium composition

expand / minimize

[Ref.: #123507]

Culture medium

CIP Medium 45

[Ref.: #123507]

Culture medium growth

[Ref.: #123507]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8479]	growth	37 °C
[Ref.: #39289]	growth	37 °C
[Ref.: #52433]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8479]	Oxygen tolerance	anaerobe
[Ref.: #52433]	Oxygen tolerance	anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %91.443

[Ref.: #8479]	Murein short key	A21.06
[Ref.: #8479]	Murein types	A4ß L-Orn(L-Lys)-D-Glu

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123507]	cellobiose ChEBI	-	degradation
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123507]	D-fructose ChEBI	+	degradation
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #123507]	D-glucose ChEBI	+	degradation
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123507]	D-xylose ChEBI	-	degradation
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123507]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123507]	lactose ChEBI	-	degradation
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123507]	maltose ChEBI	+	degradation
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123507]	nitrate ChEBI	-	reduction
[Ref.: #123507]	nitrate ChEBI	+	respiration
[Ref.: #123507]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123507]	salicin ChEBI	-	degradation
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #123507]	sucrose ChEBI	+	degradation
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #123507]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123507]	amylase	+
[Ref.: #123507]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123507]	caseinase	-	3.4.21.50
[Ref.: #123507]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #123507]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123507]	gelatinase	-
[Ref.: #123507]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123507]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123507]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123507]	tween esterase	-
[Ref.: #123507]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #52433]

Fatty acid	Percentage	ECL
C16:0	23.2	16
C14:0	21.5	14
C18:1 ω9c	17.1	17.769
C16:1 ω9c	7.6	15.774
C18:2 ω6,9c/C18:0 ANTE	5.4	17.724
C19:0 CYCLO ω9c	3.7	18.87
C12:0	3.7	12
Unidentified	2.8	19.323
Unidentified	2.5	18.225
C18:0	2.4	18
C13:0 3OH/C15:1 i I/H	2.1	14.469
C10:0	1.3	10
Unidentified	1.1	18.179
C17:1 ω5c ISO	1	16.461
C18:1 ω6c	1	17.858
C17:1 ω9c	0.9	16.773
C13:1 at 12-13	0.6	12.931
Unidentified	0.5	13.772
Unidentified	0.5	16.238
C16:0 3OH	0.5	17.52
unknown 12.486	0.5	12.486

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8479]	14567	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123507]	8684	-	-	+	+	-	+	-	-	-	-	-	+	+	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8479]	Sample type/isolated from	pig faeces

[Ref.: #52433]	Sample type/isolated from	Pig feces

[Ref.: #67770]	Sample type/isolated from	Swine feces

[Ref.: #123507]	Sample type/isolated from	Animal, Pig, feces
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Suidae (Pig,Swine)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC071798 (>99% sequence identity) for Bifidobacterium from Microbeatlas

Aquatic Samples	756
Soil Samples	263
Animal Samples	24173
Plant Samples	166
Total Samples	25358

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8479]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123507]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium thermophilum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1207	LC071798	1377	GenBank ENA	33905 tax ID
[Ref.: #67770]	Bifidobacterium thermophilum gene for 16S ribosomal RNA, partial sequence	AB437364	1513	GenBank ENA	33905 tax ID
[Ref.: #20218]	Bifidobacterium thermophilum ATCC25525 16S-23S intergenic spacer	U09528	478	GenBank ENA	33905 tax ID	*
[Ref.: #20218]	Bifidobacterium thermophilum ATCC 25525 16S ribosomal RNA	U10151	1453	GenBank ENA	33905 tax ID	*
[Ref.: #20218]	Bifidobacterium thermophilum strain DSM 20210 16S ribosomal RNA gene, partial sequence	GQ487648	138	GenBank ENA	33905 tax ID	*
[Ref.: #20218]	Bifidobacterium thermophilum gene for 16S rRNA, partial sequence, strain: JCM 1207	AB507158	666	GenBank ENA	33905 tax ID	*
[Ref.: #20218]	Bifidobacterium thermophilum strain JCM 1207 16S ribosomal RNA gene, partial sequence	GQ227712	322	GenBank ENA	33905 tax ID	*
[Ref.: #20218]	Bifidobacterium thermophilum strain KCTC 3225 16S ribosomal RNA gene, partial sequence	GU361834	1483	GenBank ENA	33905 tax ID	*
[Ref.: #20218]	Bifidobacterium thermophilum strain LMG 11573 16S ribosomal RNA gene, partial sequence	JX986965	1451	GenBank ENA	33905 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium thermophilum DSM 20210	GCA_000771265	contig	GenBank ENA	1437596 tax ID
[Ref.: #67770]	Bifidobacterium thermophilum JCM 1207	GCA_000741495	contig	GenBank ENA	33905 tax ID
[Ref.: #66792]	Bifidobacterium thermophilum DSM 20210	1437596.3	wgs	PATRIC	1437596 tax ID	*
[Ref.: #66792]	Bifidobacterium thermophilum strain JCM 1207	33905.21	wgs	PATRIC	33905 tax ID	*
[Ref.: #66792]	Bifidobacterium thermophilum JCM 1207	2600254976	draft	JGI IMG/M	33905 tax ID	*
[Ref.: #66792]	Bifidobacterium thermophilum DSM 20210	2671180426	draft	JGI IMG/M	1437596 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium thermophilum DSM 20210 PATRIC: 1437596.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	86.766	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	84.815	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.443	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	95.797	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.954	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93	no

Availability in culture collections External links

[Ref.: #8479]

Culture collection no.

DSM 20210, ATCC 25525, CIP 105420, CCUG 34983, JCM 1207, BCRC 14669, CGMCC 1.2235, HAMBI 111, KCTC 3225, LMG 11573, LMG 21813, NCFB 2253, NCIMB 702253, ISL 118

[Ref.: #71368]

SI-ID 217569

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bifidobacterium apri sp. nov., a thermophilic actinobacterium isolated from the digestive tract of wild pigs (Sus scrofa).	Pechar R, Killer J, Salmonova H, Geigerova M, Svejstil R, Svec P, Sedlacek I, Rada V, Benada O	Int J Syst Evol Microbiol	10.1099/ijsem.0.001956	2017	*
Phylogeny	Species identification of genus Bifidobacterium based on partial HSP60 gene sequences and proposal of Bifidobacterium thermacidophilum subsp. porcinum subsp. nov.	Zhu L, Li W, Dong X	Int J Syst Evol Microbiol	10.1099/ijs.0.02617-0	2003	*
	Glycan cross-feeding activities between bifidobacteria under in vitro conditions.	Turroni F, Ozcan E, Milani C, Mancabelli L, Viappiani A, van Sinderen D, Sela DA, Ventura M	Front Microbiol	10.3389/fmicb.2015.01030	2015	*

References

#8479

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20210

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39289 ; Curators of the CIP;
#52433 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 34983

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71368

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID217569.1 )

#123507 Collection of Institut Pasteur ; Curators of the CIP; CIP 105420
* These data were automatically processed and therefore are not curated

Change proposal

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Bifidobacterium thermophilum DSM 20210

Change proposal

Change proposal