Bifidobacterium thermophilum (DSM 102827, BSM-130-P53-3C)

Name: Bifidobacterium thermophilum (DSM 102827, BSM-130-P53-3C)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158889

Type strain

Strain Designation BSM-130-P53-3C

Culture col. no. DSM 102827 BSM-130-P53-3C

NCBI tax ID(s) 33905

Special Collections DSMZ Pig DZIF

History DSMZ <- D. Wylensek, TU Munich, Freising-Weihenstephan, Germany; BSM-130-P53-3C

Links

Bifidobacterium thermophilum BSM-130-P53-3C is a bacterium that was isolated from feces; pig, 25 month old, genotype: P53R167H/+ referring to protein p53.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398678

DSM 102827

@ref 20215

Last LPSN update 2026-05-29 08:44:04

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium thermophilum

Full scientific name Bifidobacterium thermophilum corrig. Mitsuoka 1969 (Approved Lists 1980)

Synonyms (1)

Bifidobacterium thermophilium

BacDive ID	Other strains from **Bifidobacterium thermophilum** (8)	Type strain
1721	B. thermophilum P2-91, DSM 20210, ATCC 25525, CIP 105420, ... (type strain)
1720	B. thermophilum C3/12, DSM 20209
1722	B. thermophilum RU 326, DSM 20212, ATCC 25866, JCM 1268, ...
165461	B. thermophilum JCM 7031
165462	B. thermophilum JCM 7033
165463	B. thermophilum JCM 7034
165464	B. thermophilum JCM 7036
165480	B. thermophilum JCM 7088, ATCC 25867, LMG 18893

Morphology

Cell morphology

@ref	Motility	Confidence
125438		93

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65711	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
65711	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
65711	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		97.838

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65711	feces; pig, 25 month old, genotype: P53R167H/+ referring to protein p53	Kranzberg (Bavaria)	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537458 (>99% sequence identity) for Bifidobacterium from Microbeatlas

Aquatic Samples	756
Soil Samples	263
Animal Samples	24173
Plant Samples	166
Total Samples	25358

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
65711	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1284404v1 assembly for Bifidobacterium thermophilum BSM-130-P53-3C	contig	GCA_012844045	33905.32	33905	71.27

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65711	Bifidobacterium sp. strain DSM 102827 16S ribosomal RNA gene, partial sequence	MN537458	1482		41200

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1284404v1 assembly for Bifidobacterium thermophilum BSM-130-P53-3C
NCBI: GCA_012844045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	66.74	no
125439	gram_stain	BacteriaNetⓘ	positive	64.13	no
125439	spore_formation	BacteriaNetⓘ	no	97.84	no
125439	motility	BacteriaNetⓘ	no	77.75	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium thermophilum BSM-130-P53-3C
NCBI: GCA_012844045.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.88	no
125438	anaerobic	anaerobicⓘ	yes	84.87	no
125438	aerobic	aerobicⓘ	no	94.77	no
125438	spore-forming	spore-formingⓘ	no	89.78	no
125438	thermophilic	thermophileⓘ	no	92.47	no
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65711	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102827
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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