Name: Sporomusa ovata H1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17189

Type strain:

Species: Sporomusa ovata

Strain Designation: H1

Culture col. no.: DSM 2662, ATCC 35899

Strain history: <- R. Oßmer, Universität Göttingen, Institut für Mikrobiologie, Germany; H1 <- B. H. Howard {1981}

NCBI tax ID(s): 1123288 (strain), 2378 (species)

Other strains from Sporomusa ovata

S. ovata H6, DSM 2663
S. ovata Nile, DSM 3300

Section

Sporomusa ovata H1 is an anaerobe, mesophilic bacterium that was isolated from sugar beet leaf silage.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Selenomonadales*
	Family	*Sporomusaceae*
	Genus	*Sporomusa*
	Species	**Sporomusa ovata**
	Full Scientific Name (PNU)	Sporomusa ovata Möller et al. 1985

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1194]

Culture medium

SPOROMUSA MEDIUM (BETAINE) (DSMZ Medium 311)

[Ref.: #1194]

Culture medium growth

[Ref.: #1194]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #1194]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1194]			growth	35 °C

[Ref.: #1194]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1194]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1194]	Sample type/isolated from	sugar beet leaf silage
[Ref.: #1194]	Geographic location (country and/or sea, region)	Göttingen
[Ref.: #1194]	Country	Germany
[Ref.: #1194]	Country ISO 3 Code	DEU
[Ref.: #1194]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1194]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Sporomusa ovata partial 16S rRNA gene, strain DSM 2662, clone K38	HE962131	1742	ENA	2378 tax ID	*
[Ref.: #20218]	Sporomusa ovata partial 16S rRNA gene, strain DSM 2662, clone K35	HE962132	1725	ENA	2378 tax ID	*
[Ref.: #20218]	Sporomusa ovata partial 16S rRNA gene, strain DSM 2662, clone K39	HE962133	1719	ENA	2378 tax ID	*
[Ref.: #20218]	Sporomusa ovata partial 16S rRNA gene, strain DSM 2662, clone K32	HE962134	1769	ENA	2378 tax ID	*
[Ref.: #20218]	Sporomusa ovata partial 16S rRNA gene, strain DSM 2662, clone K34	HE962135	1750	ENA	2378 tax ID	*
[Ref.: #1194]	Sporomusa ovata 16S rRNA gene, strain DSM 2662 Type	AJ279800	1500	ENA	2378 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sporomusa ovata DSM 2662 DSM 2662	GCA_000445445	contig	GenBank	1123288 tax ID	*
[Ref.: #66792]	Sporomusa ovata DSM 2662 DSM 2662	GCA_000423685	scaffold	GenBank	1123288 tax ID	*
[Ref.: #66792]	Sporomusa ovata DSM 2662	1123288.4	wgs	PATRIC	1123288 tax ID	*
[Ref.: #66792]	Sporomusa ovata DSM 2662	1123288.3	wgs	PATRIC	1123288 tax ID	*
[Ref.: #66792]	Sporomusa ovata DSM 2662	2524614594	draft	JGI IMG/M	1123288 tax ID	*
[Ref.: #66792]	Sporomusa ovata H1, DSM 2662	2579778983	draft	JGI IMG/M	1123288 tax ID	*

[Ref.: #1194]

GC-content

43.3 mol%

sequence analysis

Availability in culture collections External links

[Ref.: #1194]

Culture collection no.

DSM 2662, ATCC 35899

[Ref.: #20218]

Associated Passport(s) in StrainInfo

111459, 111458

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Non-growth-associated demethylation of dimethylsulfoniopropionate by (homo)acetogenic bacteria.	Jansen M, Hansen TA	Appl Environ Microbiol	10.1128/AEM.67.1.300-306.2001	2001	*
	First Insights into the Genome of the Gram-Negative, Endospore-Forming Organism Sporomusa ovata Strain H1 DSM 2662.	Poehlein A, Gottschalk G, Daniel R	Genome Announc	10.1128/genomeA.00734-13	2013	*

References

#1194

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2662

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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