Bifidobacterium pullorum subsp. pullorum (CCUG 35235, CIP 107006, DSM 20433)

Name: Bifidobacterium pullorum subsp. pullorum (CCUG 35235, CIP 107006, DSM 20433)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1718

Type strain

Strain Designation 1145

Culture col. no. CCUG 35235 CIP 107006 DSM 20433 ATCC 27685 1145 8 more

NCBI tax ID(s) 78448 2792717

Special Collections DSMZ CCUG JCM KCTC CIP

History <- ATCC <- V. Scardovi, 1145 ATCC 27685 <-- V. Scardovi P145. CIP <- 2001, CCUG <- F. Gavini, Villeneuve d'Ascq, France: strain CUETM 89 <- ATCC <- V. Scardovi: strain 1145

Links

Bifidobacterium pullorum subsp. pullorum 1145 is an anaerobe, mesophilic, Gram-positive prokaryote that was isolated from faeces of chicken.

Gram-positive rod-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 9649

LMG 11572,ATCC 27685,CCUG 35235,DSM 20433,NCFB 2260,JCM 1214,CCRC 14678,NCIMB 702260,NCDO2260,LMG21816,CIP 107006,KCTC 3274,AS 1.2240,KCTC 3280,KCTC 3478,BCRC 14678,CGMCC 1.2240

@ref 20215

Last LPSN update 2025-12-16 09:47:10

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium pullorum subsp. pullorum

Full scientific name Bifidobacterium pullorum subsp. pullorum (Trovatelli et al. 1974) Nouioui et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
122044	positive	rod-shaped
125438				93

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8809	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)	Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
39631	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
122044	CIP Medium 20	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8809	positive	growth	37	mesophilic
39631	positive	growth	37	mesophilic
52615	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
8809	anaerobe
52615	anaerobe
122044	anaerobe

Spore formation

@ref	Spore formation	Confidence
125438		90.209
125439		96.4

Murein

@ref	Murein short key	Type
8809	A11.31	A4alpha L-Lys-D-Asp

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
122044	17057 ChEBI	cellobiose	-	degradation
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
122044	17108 ChEBI	D-arabinose	-	degradation
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
122044	15824 ChEBI	D-fructose	-	degradation
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
122044	17634 ChEBI	D-glucose	-	degradation
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
122044	65327 ChEBI	D-xylose	-	degradation
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
122044	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
122044	17716 ChEBI	lactose	-	degradation
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
122044	17306 ChEBI	maltose	+/-	degradation
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
122044	17632 ChEBI	nitrate	-	reduction
122044	17632 ChEBI	nitrate	+	respiration
122044	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	+	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	+	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
122044	17814 ChEBI	salicin	+/-	degradation
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
122044	17992 ChEBI	sucrose	-	degradation
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	ChEBI	Metabolite	Is sensitive	Is resistant
122044	6909	metronidazole

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122044	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122044	amylase	-
68382	beta-galactosidase	+	3.2.1.23	from API zym
122044	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122044	caseinase	-	3.4.21.50
122044	catalase	-	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
122044	DNase	-
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
122044	gelatinase	-
122044	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
122044	lipase	-
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
122044	oxidase	-
122044	protease	-
68382	trypsin	-	3.4.21.4	from API zym
122044	tween esterase	-
122044	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122044	-	-	-	-	-	+	+	+	-	-	+	-	+	+	-	+	+	-	-	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
8809	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Birds	#Chicken
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type
8809	faeces of chicken
52615	Chicken feces
67770	Feces of a chicken
122044	Chicken, feces

Taxonmaps

69479

Global distribution of 16S sequence LC071802 (>99% sequence identity) for Bifidobacterium pullorum subclade from Microbeatlas

Aquatic Samples	1025
Soil Samples	710
Animal Samples	40343
Plant Samples	221
Total Samples	42299

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8809	1	Risk group (German classification) According to TRBA 466
122044	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1463488v1 assembly for Bifidobacterium pullorum LMG 21816	contig	GCA_014634885	78448.10	8006882260	78448	73
124043	ASM3952128v1 assembly for Bifidobacterium pullorum JCM 1214	scaffold	GCA_039521285			78448	72.64
67770	DSM-20433 assembly for Bifidobacterium pullorum DSM 20433	contig	GCA_000771405	1437600.3	2660238454	1437600	71.02
67770	Bifpul assembly for Bifidobacterium pullorum LMG 21816	contig	GCA_000741335	78448.3	2600254973	78448	46.82

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Bifidobacterium pullorum strain DSM 20433 16S ribosomal RNA gene, partial sequence	GQ487643	134	78448
20218	Bifidobacterium pullorum gene for 16S rRNA, partial sequence, strain: JCM 1214	AB116345	474	78448
20218	Bifidobacterium pullorum gene for 16S rRNA, partial sequence, strain: JCM 1214	AB507149	696	78448
20218	Bifidobacterium pullorum gene for 16S rRNA, partial sequence, strain: JCM 1214	D86196	1517	78448
20218	Bifidobacterium pullorum strain KCTC 3274 16S ribosomal RNA gene, partial sequence	GU361830	1477	78448
67770	Bifidobacterium pullorum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1214	LC071802	1425	78448

GC content

8809

GC-content (mol%)67.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bifidobacterium pullorum LMG 21816
NCBI: GCA_014634885

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.40	no
125439	motility	BacteriaNetⓘ	no	50.00	no
125439	gram_stain	BacteriaNetⓘ	positive	69.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	78.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium pullorum DSM 20433
PATRIC: 1437600.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	83.32	no
125438	anaerobic	anaerobicⓘ	yes	86.58	yes
125438	spore-forming	spore-formingⓘ	no	90.21	no
125438	aerobic	aerobicⓘ	no	93.70	yes
125438	thermophilic	thermophileⓘ	no	92.09	no
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Cultivation	A new selective medium for Bifidobacterium spp.	Nebra Y, Blanch AR.	Appl Environ Microbiol	10.1128/aem.65.11.5173-5176.1999	1999
Phylogeny	Identification of species belonging to the Bifidobacterium genus by PCR-RFLP analysis of a hsp60 gene fragment.	Baffoni L, Stenico V, Strahsburger E, Gaggia F, Di Gioia D, Modesto M, Mattarelli P, Biavati B.	BMC Microbiol	10.1186/1471-2180-13-149	2013
Metabolism	Diversity, ecology and intestinal function of bifidobacteria.	Bottacini F, Ventura M, van Sinderen D, O'Connell Motherway M.	Microb Cell Fact	10.1186/1475-2859-13-s1-s4	2014
Metabolism	Indole-3-lactic acid as a tryptophan metabolite produced by Bifidobacterium spp.	Aragozzini F, Ferrari A, Pacini N, Gualandris R.	Appl Environ Microbiol	10.1128/aem.38.3.544-546.1979	1979
	Prevalence of Antibiotic Resistance Genes among Human Gut-Derived Bifidobacteria.	Duranti S, Lugli GA, Mancabelli L, Turroni F, Milani C, Mangifesta M, Ferrario C, Anzalone R, Viappiani A, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.02894-16	2017
Phylogeny	Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics.	Lugli GA, Milani C, Turroni F, Duranti S, Ferrario C, Viappiani A, Mancabelli L, Mangifesta M, Taminiau B, Delcenserie V, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.02004-14	2014
Pathogenicity	Exploring the Ecology of Bifidobacteria and Their Genetic Adaptation to the Mammalian Gut.	Duranti S, Longhi G, Ventura M, van Sinderen D, Turroni F.	Microorganisms	10.3390/microorganisms9010008	2020
Phylogeny	Phylogenetic Analysis of the Bifidobacterium Genus Using Glycolysis Enzyme Sequences.	Brandt K, Barrangou R.	Front Microbiol	10.3389/fmicb.2016.00657	2016
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
	The ClgR protein regulates transcription of the clpP operon in Bifidobacterium breve UCC 2003.	Ventura M, Zhang Z, Cronin M, Canchaya C, Kenny JG, Fitzgerald GF, van Sinderen D.	J Bacteriol	10.1128/jb.187.24.8411-8426.2005	2005
	Monensin phase-out in Norwegian turkey production decreases Bifidobacterium spp. abundance while enhancing microbial diversity.	Kaspersen HP, Estensmo EL, Slettemeas JS, Haverkamp THA, Sjurseth SK, Granstad S, Sekse C, Frederiksen RF, Urdahl AM.	Microb Genom	10.1099/mgen.0.001466	2025
	Effects of meglumine antimoniate and allopurinol treatment on the fecal microbiome profile in dogs with leishmaniosis.	Marti-Carreras J, Carrasco M, Noguera-Julian M, Francino O, Leal RO, Ferrer L, Oliva G, Molina J, Roura X.	Anim Microbiome	10.1186/s42523-025-00447-3	2025
Genetics	Exploring the Functional Potential of the Broiler Gut Microbiome Using Shotgun Metagenomics	Pena N, Lafuente I, Sevillano E, Feito J, Allendez G, Munoz-Atienza E, Crispie F, Cintas L, Cotter P, Hernandez P, Borrero J.	Genes (Basel)		2025
	Walnut cake meal improves amino acids, fatty acid composition and flavor of egg yolk via the microbiota-yolk metabolites crosstalk in Jingfen-1 laying hens.	Bai X, Bi J, Li A, Deng X, Zhao Z, Hu H, Pan H.	Poult Sci	10.1016/j.psj.2025.105981	2025
	Effect of Mannan-rich fraction supplementation on commercial broiler intestinum tenue and cecum microbiota.	Leigh RJ, Corrigan A, Murphy RA, Walsh F.	Anim Microbiome	10.1186/s42523-022-00208-6	2022
	A 15-day pilot biodiversity intervention with horses in a farm system leads to gut microbiome rewilding in 10 urban Italian children.	Scicchitano D, Foresto L, Laczny CC, Cinti N, Vitagliano R, Halder R, Morri G, Turroni S, D'Amico F, Palladino G, Fiori J, Wilmes P, Rampelli S, Candela M.	One Health	10.1016/j.onehlt.2024.100902	2024
	The role of teichoic acids of bifidobacteria in driving the interaction with the human host.	Longhi G, Vergna LM, Lugli GA, Bianchi MG, Tarracchini C, Milani C, Turroni F, Bussolati O, van Sinderen D, Ventura M.	Front Microbiol	10.3389/fmicb.2025.1616397	2025
	Yeast mannan rich fraction positively influences microbiome uniformity, productivity associated taxa, and lay performance.	Leigh RJ, Corrigan A, Murphy RA, Taylor-Pickard J, Moran CA, Walsh F.	Anim Microbiome	10.1186/s42523-024-00295-7	2024
	Synthetic microbial community improves chicken intestinal homeostasis and provokes anti-Salmonella immunity mediated by segmented filamentous bacteria.	Zhang M, Shi S, Feng Y, Zhang F, Xiao Y, Li X, Pan X, Feng Y, Liu D, Guo Y, Hu Y.	ISME J	10.1093/ismejo/wraf076	2025
	Validation of method for faecal sampling in cats and dogs for faecal microbiome analysis.	Langon X.	BMC Vet Res	10.1186/s12917-023-03842-7	2023
Genetics	A catalog of microbial genes and metagenome-assembled genomes from the quail gut microbiome.	Xiong X, Rao Y, Ma J, Wang Z, He Q, Gong J, Sheng W, Xu J, Zhu X, Tan Y, Yang Y.	Poult Sci	10.1016/j.psj.2023.102931	2023
Pathogenicity	Protective Effect of Bifidobacterium lactis JYBR-190 on Intestinal Mucosal Damage in Chicks Infected With Salmonella pullorum.	Yang L, Chen Y, Bai Q, Chen X, Shao Y, Wang R, He F, Deng G.	Front Vet Sci	10.3389/fvets.2022.879805	2022
	Gut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides.	Derrien M, Mikulic N, Uyoga MA, Chenoll E, Climent E, Howard-Varona A, Nyilima S, Stoffel NU, Karanja S, Kottler R, Stahl B, Zimmermann MB, Bourdet-Sicard R.	Gut Microbes	10.1080/19490976.2023.2178793	2023
	Gut Microbiome of Patients With Breast Cancer in Vietnam.	Nguyen SM, Tran HTT, Long J, Shrubsole MJ, Cai H, Yang Y, Nguyen LM, Nguyen GH, Nguyen CV, Ta TV, Wu J, Cai Q, Zheng W, Tran TV, Shu XO.	JCO Glob Oncol	10.1200/go.23.00234	2024
Phylogeny	Differentiation of Bifidobacterium species using partial RNA polymerase {beta}-subunit (rpoB) gene sequences.	Kim BJ, Kim HY, Yun YJ, Kim BJ, Kook YH.	Int J Syst Evol Microbiol	10.1099/ijs.0.020339-0	2010
Genetics	Comprehensive profile of the companion animal gut microbiome integrating reference-based and reference-free methods.	Branck T, Hu Z, Nickols WA, Walsh AM, Bhosle A, Short MI, Nearing JT, Asnicar F, McIver LJ, Maharjan S, Rahnavard A, Louyakis AS, Badri DV, Brockel C, Thompson KN, Huttenhower C.	ISME J	10.1093/ismejo/wrae201	2024
Genetics	Mobilome and Resistome Reconstruction from Genomes Belonging to Members of the Bifidobacterium Genus.	Mancino W, Lugli GA, Sinderen DV, Ventura M, Turroni F.	Microorganisms	10.3390/microorganisms7120638	2019
	Molecular microbial analysis of Bifidobacterium isolates from different environments by the species-specific amplified ribosomal DNA restriction analysis (ARDRA).	Ventura M, Elli M, Reniero R, Zink R.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2001.tb00831.x	2001
Pathogenicity	Effects of dietary inulin supplementation on the composition and dynamics of cecal microbiota and growth-related parameters in broiler chickens.	Xia Y, Kong J, Zhang G, Zhang X, Seviour R, Kong Y.	Poult Sci	10.3382/ps/pez483	2019
	The genus bifidobacterium: From genomics to functionality of an important component of the mammalian gut microbiota running title: Bifidobacterial adaptation to and interaction with the host.	Alessandri G, van Sinderen D, Ventura M.	Comput Struct Biotechnol J	10.1016/j.csbj.2021.03.006	2021
Genetics	Tracking the Taxonomy of the Genus Bifidobacterium Based on a Phylogenomic Approach.	Lugli GA, Milani C, Duranti S, Mancabelli L, Mangifesta M, Turroni F, Viappiani A, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.02249-17	2018
	Early-Life Immune System Maturation in Chickens Using a Synthetic Community of Cultured Gut Bacteria.	Zenner C, Hitch TCA, Riedel T, Wortmann E, Tiede S, Buhl EM, Abt B, Neuhaus K, Velge P, Overmann J, Kaspers B, Clavel T.	mSystems	10.1128/msystems.01300-20	2021
Metabolism	Characterization of the serpin-encoding gene of Bifidobacterium breve 210B.	Turroni F, Foroni E, O'Connell Motherway M, Bottacini F, Giubellini V, Zomer A, Ferrarini A, Delledonne M, Zhang Z, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.02938-09	2010
	Designing primers and evaluation of the efficiency of propidium monoazide - Quantitative polymerase chain reaction for counting the viable cells of Lactobacillus gasseri and Lactobacillus salivarius.	Lai CH, Wu SR, Pang JC, Ramireddy L, Chiang YC, Lin CK, Tsen HY.	J Food Drug Anal	10.1016/j.jfda.2016.10.004	2017
	Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: genetic, transcriptional, and phylogenetic analyses.	Ventura M, Canchaya C, Zink R, Fitzgerald GF, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.70.10.6197-6209.2004	2004
Enzymology	Detection of Bifidobacterium animalis subsp. lactis (Bb12) in the intestine after feeding of sows and their piglets.	Solano-Aguilar G, Dawson H, Restrepo M, Andrews K, Vinyard B, Urban JF.	Appl Environ Microbiol	10.1128/aem.00309-08	2008
Genetics	Phylogenetic classification of ten novel species belonging to the genus Bifidobacterium comprising B. phasiani sp. nov., B. pongonis sp. nov., B. saguinibicoloris sp. nov., B. colobi sp. nov., B. simiiventris sp. nov., B. santillanense sp. nov., B. miconis sp. nov., B. amazonense sp. nov., B. pluvialisilvae sp. nov., and B. miconisargentati sp. nov.	Lugli GA, Calvete-Torre I, Alessandri G, Milani C, Turroni F, Laiolo P, Ossiprandi MC, Margolles A, Ruiz L, Ventura M.	Syst Appl Microbiol	10.1016/j.syapm.2021.126273	2021
Phylogeny	Five novel bifidobacterial species isolated from faeces of primates in two Czech zoos: Bifidobacterium erythrocebi sp. nov., Bifidobacterium moraviense sp. nov., Bifidobacterium oedipodis sp. nov., Bifidobacterium olomucense sp. nov. and Bifidobacterium panos sp. nov.	Neuzil-Bunesova V, Lugli GA, Modrackova N, Vlkova E, Bolechova P, Burtscher J, Longhi G, Mancabelli L, Killer J, Domig K, Ventura M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004573	2020
Phylogeny	Proposal of Bifidobacterium saeculare Biavati et al. 1992 as a later heterotypic synonym of Bifidobacterium gallinarum Watabe et al. 1983 and Bifidobacterium gallinarum subsp. saeculare subsp. nov.	Liu DD, Wang H, Gu CT	Int J Syst Evol Microbiol	10.1099/ijsem.0.004474	2020
Phylogeny	Bifidobacterium eulemuris sp. nov., isolated from faeces of black lemurs (Eulemur macaco).	Michelini S, Modesto M, Pisi AM, Filippini G, Sandri C, Spiezio C, Biavati B, Sgorbati B, Mattarelli P	Int J Syst Evol Microbiol	10.1099/ijsem.0.000924	2016

References

#8809	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20433
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#39631	; Curators of the CIP;
#52615	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 35235
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122044	Collection of Institut Pasteur ; Curators of the CIP; CIP 107006
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bifidobacterium pullorum subsp. pullorum (CCUG 35235, CIP 107006, DSM 20433)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Murein

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Antibiotic resistance

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

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Genome sequences

Genome browser: GCA_014634885

16S sequences

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