Name: Bifidobacterium pullorum 1145
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1718

Type strain:

Species: Bifidobacterium pullorum

Strain Designation: 1145

Culture col. no.: CCUG 35235, CIP 107006, DSM 20433, ATCC 27685, JCM 1214, BCRC 14678, CGMCC 1.2240, KCTC 3274, LMG 11572, LMG 21816, NCFB 2260, CUETM 89/17

Strain history: CIP <- 2001, CCUG <- F. Gavini, Villeneuve d'Ascq, France: strain CUETM 89 <- ATCC <- V. Scardovi: strain 1145

NCBI tax ID(s): 1437600 (strain), 78448 (species)

SI-ID 9649

LMG 11572, ATCC 27685, CCUG 35235, DSM 20433, NCFB 2260, JCM 1214, CCRC 14678, NCIMB 702260, NCDO2260, LMG21816, CIP 107006, KCTC 3274, AS 1.2240, KCTC 3280, KCTC 3478, BCRC 14678, CGMCC 1.2240

Special Collections

Section

Bifidobacterium pullorum 1145 is an anaerobe, Gram-positive bacterium that was isolated from faeces of chicken.

Gram-positive
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium pullorum**
	Full Scientific Name (LPSN)	Bifidobacterium pullorum Trovatelli et al. 1974 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #122044]	Gram stain	positive

[Ref.: #122044]	Cell shape	rod-shaped

[Ref.: #122044]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8809]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #8809]

Culture medium growth

[Ref.: #8809]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8809]

Culture medium composition

expand / minimize

[Ref.: #39631]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #39631]

Culture medium growth

[Ref.: #39631]

Culture medium composition

expand / minimize

[Ref.: #122044]

Culture medium

CIP Medium 20

[Ref.: #122044]

Culture medium growth

[Ref.: #122044]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8809]	growth	37 °C
[Ref.: #39631]	growth	37 °C
[Ref.: #52615]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8809]	Oxygen tolerance	anaerobe
[Ref.: #52615]	Oxygen tolerance	anaerobe
[Ref.: #122044]	Oxygen tolerance	anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %90.209

[Ref.: #8809]	Murein short key	A11.31
[Ref.: #8809]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #122044]	cellobiose ChEBI	-	degradation
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122044]	D-arabinose ChEBI	-	degradation
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122044]	D-fructose ChEBI	-	degradation
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122044]	D-glucose ChEBI	-	degradation
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122044]	D-xylose ChEBI	-	degradation
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122044]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122044]	lactose ChEBI	-	degradation
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122044]	maltose ChEBI	+/-	degradation
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122044]	nitrate ChEBI	-	reduction
[Ref.: #122044]	nitrate ChEBI	+	respiration
[Ref.: #122044]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122044]	salicin ChEBI	+/-	degradation
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122044]	sucrose ChEBI	-	degradation
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122044]		metronidazole ChEBI	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #122044]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122044]	amylase	-
[Ref.: #122044]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122044]	caseinase	-	3.4.21.50
[Ref.: #122044]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #122044]	DNase	-
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #122044]	gelatinase	-
[Ref.: #122044]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122044]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #122044]	oxidase	-
[Ref.: #122044]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122044]	tween esterase	-
[Ref.: #122044]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8809]	14655	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122044]	9989	-	-	-	-	-	+	+	+	-	-	+	-	+	+	-	+	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8809]	Sample type/isolated from	faeces of chicken

[Ref.: #52615]	Sample type/isolated from	Chicken feces

[Ref.: #67770]	Sample type/isolated from	Feces of a chicken

[Ref.: #122044]	Sample type/isolated from	Chicken, feces
* marker position based on {}

Isolation sources categories

#Host	#Birds	#Chicken
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC071802 (>99% sequence identity) for Bifidobacterium pullorum subclade from Microbeatlas

Aquatic Samples	1025
Soil Samples	710
Animal Samples	40343
Plant Samples	221
Total Samples	42299

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8809]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122044]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium pullorum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1214	LC071802	1425	GenBank ENA	78448 tax ID
[Ref.: #20218]	Bifidobacterium pullorum strain DSM 20433 16S ribosomal RNA gene, partial sequence	GQ487643	134	GenBank ENA	78448 tax ID	*
[Ref.: #20218]	Bifidobacterium pullorum gene for 16S rRNA, partial sequence, strain: JCM 1214	AB116345	474	GenBank ENA	78448 tax ID	*
[Ref.: #20218]	Bifidobacterium pullorum gene for 16S rRNA, partial sequence, strain: JCM 1214	AB507149	696	GenBank ENA	78448 tax ID	*
[Ref.: #20218]	Bifidobacterium pullorum gene for 16S rRNA, partial sequence, strain: JCM 1214	D86196	1517	GenBank ENA	78448 tax ID	*
[Ref.: #20218]	Bifidobacterium pullorum strain KCTC 3274 16S ribosomal RNA gene, partial sequence	GU361830	1477	GenBank ENA	78448 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium pullorum LMG 21816	GCA_000741335	contig	GenBank ENA	78448 tax ID
[Ref.: #67770]	Bifidobacterium pullorum LMG 21816	GCA_014634885	contig	GenBank ENA	78448 tax ID
[Ref.: #67770]	Bifidobacterium pullorum DSM 20433	GCA_000771405	contig	GenBank ENA	1437600 tax ID
[Ref.: #66792]	Bifidobacterium pullorum strain LMG 21816	78448.3	wgs	PATRIC	78448 tax ID	*
[Ref.: #66792]	Bifidobacterium pullorum strain LMG 21816	78448.10	wgs	PATRIC	78448 tax ID	*
[Ref.: #66792]	Bifidobacterium pullorum LMG 21816	2600254973	draft	JGI IMG/M	78448 tax ID	*

[Ref.: #8809]

GC-content

67.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bifidobacterium pullorum DSM 20433 PATRIC: 1437600.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	79	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium pullorum DSM 20433 PATRIC: 1437600.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	83.321	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	86.584	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.209	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	93.699	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.087	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93	no

Availability in culture collections External links

[Ref.: #8809]

Culture collection no.

CCUG 35235, CIP 107006, DSM 20433, ATCC 27685, JCM 1214, BCRC 14678, CGMCC 1.2240, KCTC 3274, LMG 11572, LMG 21816, NCFB 2260, CUETM 89/17

[Ref.: #71365]

SI-ID 9649

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Five novel bifidobacterial species isolated from faeces of primates in two Czech zoos: Bifidobacterium erythrocebi sp. nov., Bifidobacterium moraviense sp. nov., Bifidobacterium oedipodis sp. nov., Bifidobacterium olomucense sp. nov. and Bifidobacterium panos sp. nov.	Neuzil-Bunesova V, Lugli GA, Modrackova N, Vlkova E, Bolechova P, Burtscher J, Longhi G, Mancabelli L, Killer J, Domig K, Ventura M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004573	2020	*
Phylogeny	Proposal of Bifidobacterium saeculare Biavati et al. 1992 as a later heterotypic synonym of Bifidobacterium gallinarum Watabe et al. 1983 and Bifidobacterium gallinarum subsp. saeculare subsp. nov.	Liu DD, Wang H, Gu CT	Int J Syst Evol Microbiol	10.1099/ijsem.0.004474	2020	*
Phylogeny	Bifidobacterium eulemuris sp. nov., isolated from faeces of black lemurs (Eulemur macaco).	Michelini S, Modesto M, Pisi AM, Filippini G, Sandri C, Spiezio C, Biavati B, Sgorbati B, Mattarelli P	Int J Syst Evol Microbiol	10.1099/ijsem.0.000924	2016	*

References

#8809

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20433

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39631 ; Curators of the CIP;
#52615 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 35235

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71365

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID9649.1 )

#122044 Collection of Institut Pasteur ; Curators of the CIP; CIP 107006
* These data were automatically processed and therefore are not curated

Change proposal

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Search for species Bifidobacterium pullorum subsp. pullorum in external resources:
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Bifidobacterium pullorum DSM 20433

Bifidobacterium pullorum DSM 20433

Change proposal

Change proposal