Name: Veillonella parvula subsp. parvula Te3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17174

Type strain:

Species: Veillonella parvula subsp. parvula

Strain Designation: Te3

Culture col. no.: CCUG 5123, ATCC 17742, DSM 2008, ATCC 10790, JCM 12972, NCTC 11810

Strain history: DSM 2008 <-- ATCC 10790 <-- J. E. Faber <-- A. R. Prévot Te3.

NCBI tax ID(s): 29466 (species)

SI-ID 264272

ATCC 10790, ATCC 17742, CCUG 5123, DSM 2008, KCTC 5019, NCTC 11810, JCM 12972, VTT E-001737

Special Collections

Section

When using BacDive for research please cite our paper

Veillonella parvula subsp. parvula Te3 is an anaerobe, mesophilic bacterium that was isolated from intestinal tract.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Veillonellales*
	Family	*Veillonellaceae*
	Genus	*Veillonella*
	Species	Veillonella parvula subsp. parvula
	Full Scientific Name (LPSN)	Veillonella parvula subsp. parvula (Veillon and Zuber 1898) Rogosa 1965 (Approved Lists 1980)

Synonym

Veillonella alcalescens subsp. alcalescens

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %90.189

[Ref.: #956]	Type of hemolysis	gamma
[Ref.: #956]	Incubation period	1-2 days

[Ref.: #44842]	Incubation period	2-3 days

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #956]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #956]

Culture medium growth

[Ref.: #956]

Culture medium link

Medium recipe at MediaDive

[Ref.: #956]

Culture medium composition

expand / minimize

[Ref.: #956]

Culture medium

VEILLONELLA MEDIUM (DSMZ Medium 136)

[Ref.: #956]

Culture medium growth

[Ref.: #956]

Culture medium link

Medium recipe at MediaDive

[Ref.: #956]

Culture medium composition

expand / minimize

[Ref.: #956]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #956]

Culture medium growth

[Ref.: #956]

Culture medium link

Medium recipe at MediaDive

[Ref.: #956]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #956]	growth	37 °C
[Ref.: #44842]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #956]	Oxygen tolerance	anaerobe
[Ref.: #44842]	Oxygen tolerance	anaerobe
[Ref.: #125439]	Oxygen tolerance	anaerobe Confidence in %92.3

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	+	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #956]	14677	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-
[Ref.: #956]	14528	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-
[Ref.: #956]	13467	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #956]	13466	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #956]	Sample type/isolated from	intestinal tract

[Ref.: #44842]	Sample type/isolated from	Intestinal tract

[Ref.: #67770]	Sample type/isolated from	Intestinal tract
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Gastrointestinal tract

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM007566 (>99% sequence identity) for Veillonella from Microbeatlas

Aquatic Samples	2
Soil Samples	2
Animal Samples	653
Plant Samples	6
Total Samples	663

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #956]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Veillonella parvula strain ATCC 10790 16S ribosomal RNA gene, partial sequence	AY995767	1497	GenBank ENA	479436 tax ID	*
[Ref.: #20218]	Veillonella parvula gene for 16S ribosomal RNA, partial sequence, strain: JCM 12972	AB538437	1524	GenBank ENA	29466 tax ID	*
[Ref.: #20218]	V.parvula 16S rRNA gene	X84005	1513	GenBank ENA	479436 tax ID	*
[Ref.: #124043]	Veillonella parvula DSM 2008 gene for 16S rRNA, partial sequence.	LC752359	588	GenBank ENA	479436 tax ID	*
[Ref.: #20218]	Veillonella parvula DSM 2008 16S ribosomal RNA gene, partial sequence	HM007566	1345	GenBank ENA	479436 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Veillonella parvula NCTC11810	GCA_900186885	complete	GenBank ENA	29466 tax ID	*
[Ref.: #66792]	Veillonella parvula DSM 2008	GCA_000024945	complete	GenBank ENA	479436 tax ID	*
[Ref.: #66792]	Veillonella parvula DSM 2008	479436.6	complete	PATRIC	479436 tax ID	*
[Ref.: #66792]	Veillonella parvula strain NCTC11810	29466.62	complete	PATRIC	29466 tax ID	*
[Ref.: #66792]	Veillonella parvula Te3, DSM 2008	646311965	complete	JGI IMG/M	479436 tax ID	*
[Ref.: #66792]	Veillonella parvula NCTC 11810	2814123216	complete	JGI IMG/M	29466 tax ID	*

[Ref.: #956]	GC-content	38.0 mol%
[Ref.: #67770]	GC-content	38 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Veillonella parvula NCTC11810 NCBI: GCA_900186885.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	90.189	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	81.097	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	88.212	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	77.42	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	94.293	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	87.63	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Veillonella parvula DSM 2008 NCBI: GCA_000024945
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	79.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	64.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	89.9
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	92.3

Availability in culture collections External links

[Ref.: #956]

Culture collection no.

CCUG 5123, ATCC 17742, DSM 2008, ATCC 10790, JCM 12972, NCTC 11810

[Ref.: #86173]

SI-ID 264272

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Identification of an antibacterial protein by functional screening of a human oral metagenomic library.	Arivaradarajan P, Warburton PJ, Paramasamy G, Nair SP, Allan E, Mullany P	FEMS Microbiol Lett	10.1093/femsle/fnv142	2015	*
Enzymology	Biological effects of Veillonella parvula and Bacteroides intermedius lipopolysaccharides.	Matera G, Liberto MC, Berlinghieri MC, Foca A	Microbiologica		1991	*
Proteome	Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome.	Poppleton DI, Duchateau M, Hourdel V, Matondo M, Flechsler J, Klingl A, Beloin C, Gribaldo S	Front Microbiol	10.3389/fmicb.2017.01215	2017	*
Phylogeny	Veillonella magna sp. nov., isolated from the jejunal mucosa of a healthy pig, and emended description of Veillonella ratti.	Kraatz M, Taras D	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/001032-0	2008	*
Phylogeny	Veillonella rogosae sp. nov., an anaerobic, Gram-negative coccus isolated from dental plaque.	Arif N, Do T, Byun R, Sheehy E, Clark D, Gilbert SC, Beighton D	Int J Syst Evol Microbiol	10.1099/ijs.0.65093-0	2008	*
Lipids	Effects of growth temperature on fatty acid and alk-1-enyl group compositions of Veillonella parvula and Megasphaera elsdenii phospholipids.	Johnston NC, Goldfine H	J Bacteriol	10.1128/jb.149.2.567-575.1982	1982	*
Enzymology	Identification of a Streptococcus salivarius cell wall component mediating coaggregation with Veillonella alcalescens V1.	Weerkamp AH, McBride BC	Infect Immun	10.1128/iai.32.2.723-730.1981	1981	*
	Identifying Group-Specific Sequences for Microbial Communities Using Long k-mer Sequence Signatures.	Wang Y, Fu L, Ren J, Yu Z, Chen T, Sun F	Front Microbiol	10.3389/fmicb.2018.00872	2018	*

References

#956	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2008

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#44842 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 5123

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86173

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID264272.1 )

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Search for species Veillonella parvula subsp. parvula in external resources:
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Veillonella parvula NCTC11810

Veillonella parvula DSM 2008

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