Name: Veillonella parvula Te3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17174

Type strain:

Species: Veillonella parvula

Strain Designation: Te3

Culture col. no.: CCUG 5123, ATCC 17742, DSM 2008, ATCC 10790, JCM 12972, NCTC 11810

Strain history: DSM 2008 <-- ATCC 10790 <-- J. E. Faber <-- A. R. Prévot Te3.

NCBI tax ID(s): 479436 (strain), 29466 (species)

SI-ID 264272

ATCC 10790, ATCC 17742, CCUG 5123, DSM 2008, KCTC 5019, NCTC 11810, JCM 12972, VTT E-001737

Special Collections

Other strains from Veillonella parvula

Section

Veillonella parvula Te3 is an anaerobe, Gram-negative bacterium that was isolated from intestinal tract.

Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Veillonellales*
	Family	*Veillonellaceae*
	Genus	*Veillonella*
	Species	**Veillonella parvula**
	Full Scientific Name (LPSN)	Veillonella parvula (Veillon and Zuber 1898) Prévot 1933 (Approved Lists 1980)

	Synonym	"Staphylococcus* parvulus"*
	Synonym	Veillonella alcalescens

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %90.189

[Ref.: #956]	Type of hemolysis	gamma
[Ref.: #956]	Incubation period	1-2 days

[Ref.: #44842]	Incubation period	2-3 days

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #956]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #956]

Culture medium growth

[Ref.: #956]

Culture medium link

Medium recipe at MediaDive

[Ref.: #956]

Culture medium composition

expand / minimize

[Ref.: #956]

Culture medium

VEILLONELLA MEDIUM (DSMZ Medium 136)

[Ref.: #956]

Culture medium growth

[Ref.: #956]

Culture medium link

Medium recipe at MediaDive

[Ref.: #956]

Culture medium composition

expand / minimize

[Ref.: #956]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #956]

Culture medium growth

[Ref.: #956]

Culture medium link

Medium recipe at MediaDive

[Ref.: #956]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #956]	growth	37 °C
[Ref.: #44842]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #956]	Oxygen tolerance	anaerobe
[Ref.: #44842]	Oxygen tolerance	anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	+	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #956]	13326	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-
[Ref.: #956]	13178	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-
[Ref.: #956]	12117	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #956]	12116	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #956]	Sample type/isolated from	intestinal tract

[Ref.: #44842]	Sample type/isolated from	Intestinal tract

[Ref.: #67770]	Sample type/isolated from	Intestinal tract
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Gastrointestinal tract

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM007566 (>99% sequence identity) for Veillonella from Microbeatlas

Aquatic Samples	2
Soil Samples	2
Animal Samples	653
Plant Samples	6
Total Samples	663

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #956]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Veillonella parvula strain ATCC 10790 16S ribosomal RNA gene, partial sequence	AY995767	1497	GenBank ENA	479436 tax ID	*
[Ref.: #20218]	Veillonella parvula gene for 16S ribosomal RNA, partial sequence, strain: JCM 12972	AB538437	1524	GenBank ENA	29466 tax ID	*
[Ref.: #20218]	V.parvula 16S rRNA gene	X84005	1513	GenBank ENA	479436 tax ID	*
[Ref.: #124043]	Veillonella parvula DSM 2008 gene for 16S rRNA, partial sequence.	LC752359	588	GenBank ENA	479436 tax ID	*
[Ref.: #20218]	Veillonella parvula DSM 2008 16S ribosomal RNA gene, partial sequence	HM007566	1345	GenBank ENA	479436 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Veillonella parvula NCTC11810	GCA_900186885	complete	GenBank ENA	29466 tax ID	*
[Ref.: #66792]	Veillonella parvula DSM 2008	GCA_000024945	complete	GenBank ENA	479436 tax ID	*
[Ref.: #66792]	Veillonella parvula DSM 2008	479436.6	complete	PATRIC	479436 tax ID	*
[Ref.: #66792]	Veillonella parvula strain NCTC11810	29466.62	complete	PATRIC	29466 tax ID	*
[Ref.: #66792]	Veillonella parvula Te3, DSM 2008	646311965	complete	JGI IMG/M	479436 tax ID	*
[Ref.: #66792]	Veillonella parvula NCTC 11810	2814123216	complete	JGI IMG/M	29466 tax ID	*

[Ref.: #956]	GC-content	38.0 mol%
[Ref.: #67770]	GC-content	38 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Veillonella parvula DSM 2008 DSM 2008 NCBI: GCA_000024945.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	88	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Veillonella parvula NCTC11810 NCBI: GCA_900186885.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	90.189	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	81.097	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	88.212	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	77.42	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.293	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.63	no

Availability in culture collections External links

[Ref.: #956]

Culture collection no.

CCUG 5123, ATCC 17742, DSM 2008, ATCC 10790, JCM 12972, NCTC 11810

[Ref.: #86173]

SI-ID 264272

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Identification of an antibacterial protein by functional screening of a human oral metagenomic library.	Arivaradarajan P, Warburton PJ, Paramasamy G, Nair SP, Allan E, Mullany P	FEMS Microbiol Lett	10.1093/femsle/fnv142	2015	*
Enzymology	Biological effects of Veillonella parvula and Bacteroides intermedius lipopolysaccharides.	Matera G, Liberto MC, Berlinghieri MC, Foca A	Microbiologica		1991	*
Proteome	Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome.	Poppleton DI, Duchateau M, Hourdel V, Matondo M, Flechsler J, Klingl A, Beloin C, Gribaldo S	Front Microbiol	10.3389/fmicb.2017.01215	2017	*
Phylogeny	Veillonella magna sp. nov., isolated from the jejunal mucosa of a healthy pig, and emended description of Veillonella ratti.	Kraatz M, Taras D	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/001032-0	2008	*
Phylogeny	Veillonella rogosae sp. nov., an anaerobic, Gram-negative coccus isolated from dental plaque.	Arif N, Do T, Byun R, Sheehy E, Clark D, Gilbert SC, Beighton D	Int J Syst Evol Microbiol	10.1099/ijs.0.65093-0	2008	*
Lipids	Effects of growth temperature on fatty acid and alk-1-enyl group compositions of Veillonella parvula and Megasphaera elsdenii phospholipids.	Johnston NC, Goldfine H	J Bacteriol	10.1128/jb.149.2.567-575.1982	1982	*
Enzymology	Identification of a Streptococcus salivarius cell wall component mediating coaggregation with Veillonella alcalescens V1.	Weerkamp AH, McBride BC	Infect Immun	10.1128/iai.32.2.723-730.1981	1981	*
	Identifying Group-Specific Sequences for Microbial Communities Using Long k-mer Sequence Signatures.	Wang Y, Fu L, Ren J, Yu Z, Chen T, Sun F	Front Microbiol	10.3389/fmicb.2018.00872	2018	*

References

#956	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2008

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#44842 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 5123

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86173

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID264272.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Search for species Veillonella parvula subsp. parvula in external resources:
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Veillonella parvula DSM 2008 DSM 2008

Veillonella parvula NCTC11810

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