Name: Veillonella parvula 259
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17173

Type strain:

Species: Veillonella parvula

Strain Designation: 259

Culture col. no.: DSM 2007, ATCC 17745, NCTC 11809, CCUG 5122

Strain history: <- ATCC <- M. Rogosa, 259 (Veillonella alcalescens subsp. alcalescens) <- M. Pelczar <- A.R. Prévot

NCBI tax ID(s): 686660 (strain), 29466 (species)

SI-ID 36714

ATCC 17745, CCUG 5122, DSM 2007, NCTC 11809

Special Collections

DSMZ
CCUG

Other strains from Veillonella parvula

Section

Veillonella parvula 259 is an anaerobe bacterium that was isolated from human mouth.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Veillonellales*
	Family	*Veillonellaceae*
	Genus	*Veillonella*
	Species	**Veillonella parvula**
	Full Scientific Name (LPSN)	Veillonella parvula (Veillon and Zuber 1898) Prévot 1933 (Approved Lists 1980)

	Synonym	"Staphylococcus* parvulus"*
	Synonym	Veillonella alcalescens

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %90.266

[Ref.: #955]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #955]

Culture medium

VEILLONELLA MEDIUM (DSMZ Medium 136)

[Ref.: #955]

Culture medium growth

[Ref.: #955]

Culture medium link

Medium recipe at MediaDive

[Ref.: #955]

Culture medium composition

expand / minimize

[Ref.: #955]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #955]

Culture medium growth

[Ref.: #955]

Culture medium link

Medium recipe at MediaDive

[Ref.: #955]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #955]			growth	37 °C
[Ref.: #44841]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #955]	Oxygen tolerance	anaerobe
[Ref.: #44841]	Oxygen tolerance	anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68367]	cellobiose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-glucose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-mannitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-mannose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68367]	D-xylose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	esculin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #68367]	gelatin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #68367]	glycerol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	L-arabinose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68367]	L-rhamnose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	lactose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	maltose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	melezitose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68380]	nitrate ChEBI	+	reduction	* from API rID32A
[Ref.: #68367]	raffinose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68367]	salicin ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sorbitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sucrose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	trehalose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	tryptophan ChEBI	-	energy source	* from API 20A, API rID32A
[Ref.: #68367]	urea ChEBI	-	hydrolysis	* from API 20A, API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68367]		indole ChEBI	no	* from API 20A, API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A, API 20A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A, API zym
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A, API zym
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A, API zym
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A, API 20A, API zym
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A, API zym
[Ref.: #68367]	catalase	-	1.11.1.6	* from API 20A
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68367]	gelatinase	-		* from API 20A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A, API zym
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A, API 20A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44841]

Fatty acid	Percentage	ECL
C17:1 ω8c	26.6	16.792
C13:0	17.4	13
C15:0	8.6	15
C14:0 3OH/C16:1 ISO I	7.1	15.485
C13:0 3OH/C15:1 i I/H	5.5	14.469
C18:1 DMA 17.252	4.3	17.252
C15:0 3OH	3.2	16.504
C16:1 ω9c	2.9	15.774
C17:0	2.8	17
C18:1 ω9c	2.5	17.769
C18:2 ω6,9c/C18:0 ANTE	2	17.724
C18:1 ISO H	1.7	17.46
Unidentified	1.7	17.219
C16:0	1.7	16
Unidentified	1.5	13.936
C16:1 ω9c DMA	1.3	16.242
C14:0	1.2	14
C15:1 ω8c	1.1	14.792
C12:0	1	12
Unidentified	0.9	13.49
Unidentified	0.8	14.76
C16:1 ω7c	0.8	15.819
C18:0	0.8	18
C17:1 ISO I/C16:0 DMA	0.8	16.481
C11:0	0.8	11
C17:ISO 2OH	0.7	17.875

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #955]	1996	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #955]	13252	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #44841]	4593	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #955]	12115	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	+/-	-	-	-	-	-	-
[Ref.: #955]	12114	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.
[Ref.: #955]	13436	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	+/-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #44841]	1437	-	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #955]	Sample type/isolated from	human mouth

[Ref.: #44841]	Sample type/isolated from	Human mouth
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Mouth

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY995769 (>99% sequence identity) for Veillonella from Microbeatlas

Aquatic Samples	31
Soil Samples	27
Animal Samples	8549
Plant Samples	26
Total Samples	8633

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #955]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Veillonella parvula strain ATCC 17745 16S ribosomal RNA gene, partial sequence	AY995769	1500	GenBank ENA	686660 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Veillonella parvula ATCC 17745	GCA_000177435	contig	GenBank ENA	686660 tax ID	*
[Ref.: #66792]	Veillonella parvula ATCC 17745	686660.3	wgs	PATRIC	686660 tax ID	*
[Ref.: #66792]	Veillonella parvula ATCC 17745	647000331	draft	JGI IMG/M	686660 tax ID	*

[Ref.: #955]

GC-content

37.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Veillonella parvula ATCC 17745 PATRIC: 686660.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Veillonella parvula ATCC 17745 PATRIC: 686660.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	90.266	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	80.131	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	77.509	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	87.557	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.793	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.609	no

Availability in culture collections External links

[Ref.: #955]

Culture collection no.

DSM 2007, ATCC 17745, NCTC 11809, CCUG 5122

[Ref.: #86172]

SI-ID 36714

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Interactions between salivary Bifidobacterium adolescentis and other oral bacteria: in vitro coaggregation and coadhesion assays.	Nagaoka S, Hojo K, Murata S, Mori T, Ohshima T, Maeda N	FEMS Microbiol Lett	10.1111/j.1574-6968.2008.01092.x	2008	*
Metabolism	Growth yield increase and ATP formation linked to succinate decarboxylation in Veillonella parvula.	Janssen PH	Arch Microbiol	10.1007/BF00249102	1992	*
Metabolism	Putrescine and cadaverine are constituents of peptidoglycan in Veillonella alcalescens and Veillonella parvula.	Kamio Y, Nakamura K	J Bacteriol	10.1128/jb.169.6.2881-2884.1987	1987	*
Metabolism	Characterization of a naturally occurring diamine auxotroph of Veillonella alcalescens.	Ritchey MB, Delwiche EA	J Bacteriol	10.1128/jb.124.3.1213-1219.1975	1975	*
	The Genus Veillonella IV. Serological Groupings, and Genus and Species Emendations.	Rogosa M	J Bacteriol	10.1128/jb.90.3.704-709.1965	1965	*

References

#955	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2007

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#44841 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 5122

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68367

Automatically annotated from API 20A .

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86172

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36714.1 )

* These data were automatically processed and therefore are not curated

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Search for species Veillonella parvula in external resources:
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Veillonella parvula ATCC 17745

Veillonella parvula ATCC 17745

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Change proposal