Veillonella dispar ERN is an anaerobe, coccus-shaped bacterium that was isolated from human mouth.
coccus-shaped anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Bacillota |
| Class Negativicutes |
| Order Veillonellales |
| Family Veillonellaceae |
| Genus Veillonella |
| Species Veillonella dispar |
| Full scientific name Veillonella dispar (Rogosa 1965) Mays et al. 1982 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9045 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 9045 | VEILLONELLA MEDIUM (DSMZ Medium 136) | Medium recipe at MediaDive | Name: VEILLONELLA MEDIUM (DSMZ Medium 136) Composition: Na-(DL)-lactate 7.5 g/l Trypticase 5.0 g/l Yeast extract 3.0 g/l Glucose 1.0 g/l Na-thioglycolate 0.75 g/l Putrescine 0.003 g/l Resazurin 0.001 g/l Tween 80 Distilled water | ||
| 39804 | MEDIUM 20 - for Anaerobic bacteria | Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml) | |||
| 118945 | CIP Medium 20 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 95.478 |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 9045 | A31 | A1gamma m-Dpm-direct |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68380 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32A |
| 118945 | 17057 ChEBI | cellobiose | - | degradation | |
| 68367 | 17057 ChEBI | cellobiose | - | builds acid from | from API 20A |
| 118945 | 17108 ChEBI | D-arabinose | - | degradation | |
| 118945 | 15824 ChEBI | D-fructose | - | degradation | |
| 118945 | 17634 ChEBI | D-glucose | + | degradation | |
| 68367 | 17634 ChEBI | D-glucose | - | builds acid from | from API 20A |
| 68367 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 20A |
| 68380 | 16024 ChEBI | D-mannose | - | fermentation | from API rID32A |
| 68367 | 16024 ChEBI | D-mannose | - | builds acid from | from API 20A |
| 118945 | 65327 ChEBI | D-xylose | - | degradation | |
| 68367 | 65327 ChEBI | D-xylose | - | builds acid from | from API 20A |
| 118945 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68367 | 4853 ChEBI | esculin | - | hydrolysis | from API 20A |
| 68367 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20A |
| 68367 | 17754 ChEBI | glycerol | - | builds acid from | from API 20A |
| 68367 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 20A |
| 68380 | 29985 ChEBI | L-glutamate | - | degradation | from API rID32A |
| 68367 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 20A |
| 118945 | 17716 ChEBI | lactose | - | degradation | |
| 68367 | 17716 ChEBI | lactose | - | builds acid from | from API 20A |
| 118945 | 17306 ChEBI | maltose | - | degradation | |
| 68367 | 17306 ChEBI | maltose | - | builds acid from | from API 20A |
| 68367 | 6731 ChEBI | melezitose | - | builds acid from | from API 20A |
| 118945 | 17632 ChEBI | nitrate | + | reduction | |
| 118945 | 17632 ChEBI | nitrate | + | respiration | |
| 118945 | 16301 ChEBI | nitrite | - | reduction | |
| 68380 | 16634 ChEBI | raffinose | - | fermentation | from API rID32A |
| 68367 | 16634 ChEBI | raffinose | - | builds acid from | from API 20A |
| 118945 | 17814 ChEBI | salicin | - | degradation | |
| 68367 | 17814 ChEBI | salicin | - | builds acid from | from API 20A |
| 68367 | 30911 ChEBI | sorbitol | - | builds acid from | from API 20A |
| 118945 | 17992 ChEBI | sucrose | - | degradation | |
| 68367 | 17992 ChEBI | sucrose | - | builds acid from | from API 20A |
| 68367 | 27082 ChEBI | trehalose | - | builds acid from | from API 20A |
| 68380 | 27897 ChEBI | tryptophan | - | energy source | from API rID32A |
| 68367 | 27897 ChEBI | tryptophan | - | energy source | from API 20A |
| 68380 | 16199 ChEBI | urea | - | hydrolysis | from API rID32A |
| 68367 | 16199 ChEBI | urea | - | hydrolysis | from API 20A |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 68380 | alanine arylamidase | - | 3.4.11.2 | from API rID32A |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68380 | alkaline phosphatase | - | 3.1.3.1 | from API rID32A |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 | from API rID32A |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68380 | alpha-fucosidase | - | 3.2.1.51 | from API rID32A |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68380 | alpha-galactosidase | - | 3.2.1.22 | from API rID32A |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68380 | alpha-glucosidase | - | 3.2.1.20 | from API rID32A |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 118945 | amylase | - | ||
| 68380 | arginine dihydrolase | - | 3.5.3.6 | from API rID32A |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 118945 | beta-galactosidase | - | 3.2.1.23 | |
| 68380 | beta-galactosidase | - | 3.2.1.23 | from API rID32A |
| 68380 | beta-Galactosidase 6-phosphate | - | from API rID32A | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68380 | beta-glucosidase | - | 3.2.1.21 | from API rID32A |
| 68367 | beta-glucosidase | - | 3.2.1.21 | from API 20A |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 118945 | caseinase | - | 3.4.21.50 | |
| 118945 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 118945 | DNase | - | ||
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 118945 | gelatinase | - | ||
| 68367 | gelatinase | - | from API 20A | |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 | from API rID32A |
| 68380 | glutamyl-glutamate arylamidase | - | from API rID32A | |
| 68380 | glycin arylamidase | - | from API rID32A | |
| 68380 | histidine arylamidase | - | from API rID32A | |
| 68380 | L-arginine arylamidase | - | from API rID32A | |
| 118945 | lecithinase | - | ||
| 68382 | leucine arylamidase | - | 3.4.11.1 | from API zym |
| 68380 | leucine arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | leucyl glycin arylamidase | - | 3.4.11.1 | from API rID32A |
| 118945 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32A |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 118945 | oxidase | - | ||
| 68380 | phenylalanine arylamidase | - | from API rID32A | |
| 68380 | proline-arylamidase | - | 3.4.11.5 | from API rID32A |
| 118945 | protease | - | ||
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32A |
| 68380 | serine arylamidase | - | from API rID32A | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68380 | tryptophan deaminase | - | 4.1.99.1 | from API rID32A |
| 118945 | tween esterase | - | ||
| 68380 | tyrosine arylamidase | - | from API rID32A | |
| 118945 | urease | - | 3.5.1.5 | |
| 68380 | urease | - | 3.5.1.5 | from API rID32A |
| 68367 | urease | - | 3.5.1.5 | from API 20A |
| 68382 | valine arylamidase | - | from API zym |
| @ref | URE | ADH (Arg) | alpha GAL | beta GAL | beta-Galactosidase 6-phosphatebeta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta-N-Acetyl-beta-glucosaminidasebeta NAG | MNE | RAF | GDC | alpha FUC | Reduction of nitrateNIT | IND | PAL | L-arginine arylamidaseArgA | ProA | LGA | Phenylalanine arylamidasePheA | Leucine arylamidaseLeuA | PyrA | Tyrosine arylamidaseTyrA | Alanine arylamidaseAlaA | Glycin arylamidaseGlyA | Histidine arylamidaseHisA | Glutamyl-glutamate arylamidaseGGA | Serine arylamidaseSerA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9045 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| 9045 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Global distribution of 16S sequence X84006 (>99% sequence identity) for Veillonella from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | 51184_A01 assembly for Veillonella dispar NCTC11831 | complete | 39778 | 99.7 | ||||
| 66792 | Veillonella dispar ATCC 17748 | contig | 546273 | 79.4 | ||||
| 66792 | ASM16001v1 assembly for Veillonella dispar ATCC 17748 | scaffold | 546273 | 74.94 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Veillonella dispar strain ATCC 17748 16S ribosomal RNA gene, partial sequence | AY995770 | 1498 | 39778 | ||
| 20218 | Veillonella dispar strain DSM 20735 16S ribosomal RNA gene, partial sequence | HQ012014 | 937 | 39778 | ||
| 20218 | V.dispar 16S rRNA gene | X84006 | 1513 | 39778 | ||
| 9045 | Veillonella dispar 16S ribosomal RNA gene, partial sequence | AF439639 | 1375 | 39778 | ||
| 124043 | Veillonella dispar ATCC 17748 gene for 16S rRNA, partial sequence. | LC752331 | 588 | 39778 | ||
| 124043 | Veillonella dispar DSM 20735 gene for 16S rRNA, partial sequence. | LC752454 | 588 | 39778 |
| 9045 | GC-content (mol%)38.0 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 92.01 | no |
| 125439 | motility | BacteriaNetⓘ | no | 78.52 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 76.49 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 95.48 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 90.62 | no |
| 125438 | anaerobic | anaerobicⓘ | yes | 81.63 | yes |
| 125438 | aerobic | aerobicⓘ | no | 87.49 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 79.62 | no |
| 125438 | thermophilic | thermophileⓘ | no | 94.76 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 89.85 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Assessment of a Light-Curable Hydrogel to Be Used for Root Canal Obturation. | Bhandari S, Kuehne S, Camilleri J. | J Dent Res | 10.1177/00220345241287504 | 2025 | ||
| Nitrate and a nitrate-reducing Rothia aeria strain as potential prebiotic or synbiotic treatments for periodontitis. | Mazurel D, Carda-Dieguez M, Langenburg T, Ziemyte M, Johnston W, Martinez CP, Albalat F, Llena C, Al-Hebshi N, Culshaw S, Mira A, Rosier BT. | NPJ Biofilms Microbiomes | 10.1038/s41522-023-00406-3 | 2023 | ||
| Three-Dimensional In Vitro Oral Mucosa Models of Fungal and Bacterial Infections. | Tabatabaei F, Moharamzadeh K, Tayebi L. | Tissue Eng Part B Rev | 10.1089/ten.teb.2020.0016 | 2020 | ||
| Phylogeny | First Cultivation of Health-Associated Tannerella sp. HOT-286 (BU063). | Vartoukian SR, Moazzez RV, Paster BJ, Dewhirst FE, Wade WG. | J Dent Res | 10.1177/0022034516651078 | 2016 | |
| Enzymology | In Vitro Effect of Porphyromonas gingivalis Methionine Gamma Lyase on Biofilm Composition and Oral Inflammatory Response. | Stephen AS, Millhouse E, Sherry L, Aduse-Opoku J, Culshaw S, Ramage G, Bradshaw DJ, Burnett GR, Allaker RP. | PLoS One | 10.1371/journal.pone.0169157 | 2016 | |
| Biofilm-stimulated epithelium modulates the inflammatory responses in co-cultured immune cells. | Brown JL, Johnston W, Delaney C, Rajendran R, Butcher J, Khan S, Bradshaw D, Ramage G, Culshaw S. | Sci Rep | 10.1038/s41598-019-52115-7 | 2019 | ||
| Pathogenicity | Composition and susceptibility to chlorhexidine of multispecies biofilms of oral bacteria. | Pratten J, Barnett P, Wilson M. | Appl Environ Microbiol | 10.1128/aem.64.9.3515-3519.1998 | 1998 | |
| Influence of species composition and cultivation condition on peri-implant biofilm dysbiosis in vitro. | Heine N, Bittroff K, Szafranski SP, Duitscher M, Behrens W, Vollmer C, Mikolai C, Kommerein N, Debener N, Frings K, Heisterkamp A, Scheper T, Torres-Mapa ML, Bahnemann J, Stiesch M, Doll-Nikutta K. | Front Oral Health | 10.3389/froh.2025.1649419 | 2025 | ||
| Impact of antibacterial therapeutic agents on biofilm-tissue interactions in a 3D implant-tissue-oral-bacterial-biofilm model | Mikolai C, Woll K, Rahim M, Winkel A, Falk C, Stiesch M. | Sci Rep | 2025 | |||
| Optically accessible, 3D-printed flow chamber with integrated sensors for the monitoring of oral multispecies biofilm growth in vitro. | Debener N, Heine N, Legutko B, Denkena B, Prasanthan V, Frings K, Torres-Mapa ML, Heisterkamp A, Stiesch M, Doll-Nikutta K, Bahnemann J. | Front Bioeng Biotechnol | 10.3389/fbioe.2024.1483200 | 2024 | ||
| Biocompatible liquid-infused titanium minimizes oral biofilm adhesion in flow chamber and 3D implant-tissue-biofilm in vitro models | Doll-Nikutta K, Mikolai C, Heine N, Kurselis K, Fadeeva E, Debener N, Legutko B, Kreuzkamp C, Prasanthan V, Bahnemann J, Chichkov B, Stiesch M. | Bioact Mater | 2025 | |||
| Dual Antibacterial and Soft-Tissue-Integrative Effect of Combined Strontium Acetate and Silver Nitrate on Peri-Implant Environment: Insights from Multispecies Biofilms and a 3D Coculture Model. | Kheirmand-Parizi M, Doll-Nikutta K, Mikolai C, Wirth D, Menzel H, Stiesch M. | ACS Appl Mater Interfaces | 10.1021/acsami.5c01093 | 2025 | ||
| Effect of Low-Level Laser Irradiation (810 nm) on the Proliferation and Differentiation of Osteoblast-Like Cells Cultured on SLA Titanium Discs Exposed to a Peri-implantitis Environment. | Zampa EP, Kyriakidou K, Papaparaskevas J, Pepelassi E, Karoussis IK. | J Lasers Med Sci | 10.34172/jlms.2023.57 | 2023 | ||
| Silver Nanoparticles Produced by Laser Ablation and Re-Irradiation Are Effective Preventing Peri-Implantitis Multispecies Biofilm Formation. | Perez-Tanoira R, Fernandez-Arias M, Potel C, Carballo-Fernandez R, Perez-Castro S, Boutinguiza M, Gorgolas M, Lusquinos F, Pou J. | Int J Mol Sci | 10.3390/ijms231912027 | 2022 | ||
| Adhesion Forces of Oral Bacteria to Titanium and the Correlation with Biophysical Cellular Characteristics. | Doll-Nikutta K, Winkel A, Yang I, Grote AJ, Meier N, Habib M, Menzel H, Behrens P, Stiesch M. | Bioengineering (Basel) | 10.3390/bioengineering9100567 | 2022 | ||
| Plant-based oral care product exhibits antibacterial effects on different stages of oral multispecies biofilm development in vitro. | Kommerein N, Weigel AJ, Stiesch M, Doll K. | BMC Oral Health | 10.1186/s12903-021-01504-4 | 2021 | ||
| Development and characterization of an oral multispecies biofilm implant flow chamber model. | Kommerein N, Doll K, Stumpp NS, Stiesch M. | PLoS One | 10.1371/journal.pone.0196967 | 2018 | ||
| Metabolism | An oral multispecies biofilm model for high content screening applications. | Kommerein N, Stumpp SN, Musken M, Ehlert N, Winkel A, Haussler S, Behrens P, Buettner FF, Stiesch M. | PLoS One | 10.1371/journal.pone.0173973 | 2017 | |
| Enzymology | Microbial diversity similarities in periodontal pockets and atheromatous plaques of cardiovascular disease patients. | Serra e Silva Filho W, Casarin RC, Nicolela EL, Passos HM, Sallum AW, Goncalves RB. | PLoS One | 10.1371/journal.pone.0109761 | 2014 | |
| Dialister pneumosintes associated with human brain abscesses. | Rousee JM, Bermond D, Piemont Y, Tournoud C, Heller R, Kehrli P, Harlay ML, Monteil H, Jaulhac B. | J Clin Microbiol | 10.1128/jcm.40.10.3871-3873.2002 | 2002 | ||
| Phylogeny | Molecular identification of microorganisms from endodontic infections. | Rolph HJ, Lennon A, Riggio MP, Saunders WP, MacKenzie D, Coldero L, Bagg J. | J Clin Microbiol | 10.1128/jcm.39.9.3282-3289.2001 | 2001 | |
| A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations. | Huang YJ, Kim E, Cox MJ, Brodie EL, Brown R, Wiener-Kronish JP, Lynch SV. | OMICS | 10.1089/omi.2009.0100 | 2010 | ||
| Veillonella dispar and V. atypica increased the growth of Listeria monocytogenes in liquid culture and biofilm conditions. | Shedleur-Bourguignon F, Theriault WP, Berthiaume F, Doghri I, Longpre J, Thibodeau A, Fravalo P. | PLoS One | 10.1371/journal.pone.0332852 | 2025 | ||
| Mutualistic interactions of lactate-producing lactobacilli and lactate-utilizing Veillonella dispar: Lactate and glutamate cross-feeding for the enhanced growth and short-chain fatty acid production. | Zhang SM, Hung JH, Yen TN, Huang SL. | Microb Biotechnol | 10.1111/1751-7915.14484 | 2024 | ||
| Effect of Low-Level Laser Therapy on Periodontal Host Cells and a Seven-Species Periodontitis Model Biofilm. | Dervisbegovic S, Bloch S, Maierhofer V, Behm C, Rausch-Fan X, Moritz A, Schaffer C, Andrukhov O. | Int J Mol Sci | 10.3390/ijms26146803 | 2025 | ||
| Transcriptome | Nitrate promotes the growth and the production of short-chain fatty acids and tryptophan from commensal anaerobe Veillonella dispar in the lactate-deficient environment by facilitating the catabolism of glutamate and aspartate. | Hung J-H, Zhang S-M, Huang S-L. | Appl Environ Microbiol | 10.1128/aem.01148-24 | 2024 | |
| Transcriptome | The Commensal Anaerobe Veillonella dispar Reprograms Its Lactate Metabolism and Short-Chain Fatty Acid Production during the Stationary Phase. | Zhang SM, Huang SL. | Microbiol Spectr | 10.1128/spectrum.03558-22 | 2023 | |
| Phylogeny | Bacteremia caused by Veillonella dispar in an oncological patient. | Cobo F, Perez-Carrasco V, Garcia-Salcedo JA, Navarro-Mari JM. | Anaerobe | 10.1016/j.anaerobe.2020.102285 | 2020 | |
| Comparison of In Vitro Biofilm Formation on Titanium and Zirconia Implants. | Chiou LL, Panariello BHD, Hamada Y, Gregory RL, Blanchard S, Duarte S. | Biomed Res Int | 10.1155/2023/8728499 | 2023 | ||
| The action of microbial collagenases in dentinal matrix degradation in root caries and potential strategies for its management: a comprehensive state-of-the-art review. | Barbosa CB, Monici Silva I, Dame-Teixeira N. | J Appl Oral Sci | 10.1590/1678-7757-2024-0013 | 2024 | ||
| Antibiofilm Activity of LL-37 Peptide and D-Amino Acids Associated with Antibiotics Used in Regenerative Endodontics on an Ex Vivo Multispecies Biofilm Model. | Pereira ACC, Aguiar APS, Araujo LMP, Dantas LO, Mayer MPA, Karygianni L, Thurnheer T, Pinheiro ET. | Life (Basel) | 10.3390/life12111686 | 2022 | ||
| Antibacterial Effect of Sodium Hypochlorite and EDTA in Combination with High-Purity Nisin on an Endodontic-like Biofilm Model. | Pinheiro ET, Karygianni L, Attin T, Thurnheer T. | Antibiotics (Basel) | 10.3390/antibiotics10091141 | 2021 | ||
| Antibacterial Effect of High-Purity Nisin Alone and in Combination with D-Amino Acids or Chlorhexidine in an Endodontic-Like Biofilm Model. | Pinheiro ET, Karygianni L, Attin T, Thurnheer T. | Antibiotics (Basel) | 10.3390/antibiotics10020149 | 2021 | ||
| Enzymology | Confocal Raman microscopy to identify bacteria in oral subgingival biofilm models. | Kriem LS, Wright K, Ccahuana-Vasquez RA, Rupp S. | PLoS One | 10.1371/journal.pone.0232912 | 2020 | |
| Endodontic-Like Oral Biofilms as Models for Multispecies Interactions in Endodontic Diseases. | Lukic D, Karygianni L, Flury M, Attin T, Thurnheer T. | Microorganisms | 10.3390/microorganisms8050674 | 2020 | ||
| Low-Temperature Plasma Short Exposure to Decontaminate Peri-Implantitis-Related Multispecies Biofilms on Titanium Surfaces In Vitro. | Panariello BHD, Mody DP, Eckert GJ, Witek L, Coelho PG, Duarte S. | Biomed Res Int | 10.1155/2022/1549774 | 2022 | ||
| Fusobacterium Species and Subspecies Differentially Affect the Composition and Architecture of Supra- and Subgingival Biofilms Models. | Thurnheer T, Karygianni L, Flury M, Belibasakis GN. | Front Microbiol | 10.3389/fmicb.2019.01716 | 2019 | ||
| A Robust Metatranscriptomic Technology for Population-Scale Studies of Diet, Gut Microbiome, and Human Health. | Hatch A, Horne J, Toma R, Twibell BL, Somerville KM, Pelle B, Canfield KP, Genkin M, Banavar G, Perlina A, Messier H, Klitgord N, Vuyisich M. | Int J Genomics | 10.1155/2019/1718741 | 2019 | ||
| Metabolism | Comparative Pan-Genome Analysis of Oral Veillonella Species. | Mashima I, Liao YC, Lin CH, Nakazawa F, Haase EM, Kiyoura Y, Scannapieco FA. | Microorganisms | 10.3390/microorganisms9081775 | 2021 | |
| Aggregatibacter actinomycetemcomitans H-NS promotes biofilm formation and alters protein dynamics of other species within a polymicrobial oral biofilm. | Bao K, Bostanci N, Thurnheer T, Grossmann J, Wolski WE, Thay B, Belibasakis GN, Oscarsson J. | NPJ Biofilms Microbiomes | 10.1038/s41522-018-0055-4 | 2018 | ||
| Design, construction, and in vivo augmentation of a complex gut microbiome. | Cheng AG, Ho PY, Aranda-Diaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA. | Cell | 10.1016/j.cell.2022.08.003 | 2022 | ||
| Metabolism | Effects of pH and lactate on hydrogen sulfide production by oral Veillonella spp. | Washio J, Shimada Y, Yamada M, Sakamaki R, Takahashi N. | Appl Environ Microbiol | 10.1128/aem.00606-14 | 2014 | |
| Metabolism | Metagenomic analysis of nitrate-reducing bacteria in the oral cavity: implications for nitric oxide homeostasis. | Hyde ER, Andrade F, Vaksman Z, Parthasarathy K, Jiang H, Parthasarathy DK, Torregrossa AC, Tribble G, Kaplan HB, Petrosino JF, Bryan NS. | PLoS One | 10.1371/journal.pone.0088645 | 2014 | |
| Genome resolved analysis of a premature infant gut microbial community reveals a Varibaculum cambriense genome and a shift towards fermentation-based metabolism during the third week of life. | Brown CT, Sharon I, Thomas BC, Castelle CJ, Morowitz MJ, Banfield JF. | Microbiome | 10.1186/2049-2618-1-30 | 2013 | ||
| Transcriptome | Gene expression of bacterial collagenolytic proteases in root caries. | Dame-Teixeira N, Parolo CCF, Maltz M, Rup AG, Devine DA, Do T. | J Oral Microbiol | 10.1080/20002297.2018.1424475 | 2018 | |
| Metabolism | Role of Porphyromonas gingivalis gingipains in multi-species biofilm formation. | Bao K, Belibasakis GN, Thurnheer T, Aduse-Opoku J, Curtis MA, Bostanci N. | BMC Microbiol | 10.1186/s12866-014-0258-7 | 2014 | |
| Metabolism | Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation. | Zhang J, Lacroix C, Wortmann E, Ruscheweyh HJ, Sunagawa S, Sturla SJ, Schwab C. | BMC Microbiol | 10.1186/s12866-019-1483-x | 2019 | |
| Transcriptome | Transcriptional profiling of coaggregation interactions between Streptococcus gordonii and Veillonella parvula by Dual RNA-Seq. | Mutha NVR, Mohammed WK, Krasnogor N, Tan GYA, Wee WY, Li Y, Choo SW, Jakubovics NS. | Sci Rep | 10.1038/s41598-019-43979-w | 2019 | |
| Molecular-phylogenetic characterization of the microbiota in ulcerated and non-ulcerated regions in the patients with Crohn's disease. | Li Q, Wang C, Tang C, Li N, Li J. | PLoS One | 10.1371/journal.pone.0034939 | 2012 | ||
| CMG-biotools, a free workbench for basic comparative microbial genomics. | Vesth T, Lagesen K, Acar O, Ussery D. | PLoS One | 10.1371/journal.pone.0060120 | 2013 | ||
| Proteome | Proteomic shifts in multi-species oral biofilms caused by Anaeroglobus geminatus. | Bao K, Bostanci N, Thurnheer T, Belibasakis GN. | Sci Rep | 10.1038/s41598-017-04594-9 | 2017 | |
| Metabolism | The expression of gingival epithelial junctions in response to subgingival biofilms. | Belibasakis GN, Kast JI, Thurnheer T, Akdis CA, Bostanci N. | Virulence | 10.1080/21505594.2015.1081731 | 2015 | |
| Genetics | MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing. | Rawat A, Engelthaler DM, Driebe EM, Keim P, Foster JT. | PLoS One | 10.1371/journal.pone.0110915 | 2014 | |
| Genetics | Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. | Pride DT, Salzman J, Haynes M, Rohwer F, Davis-Long C, White RA, Loomer P, Armitage GC, Relman DA. | ISME J | 10.1038/ismej.2011.169 | 2012 | |
| Natural Antimicrobials and Oral Microorganisms: A Systematic Review on Herbal Interventions for the Eradication of Multispecies Oral Biofilms. | Karygianni L, Al-Ahmad A, Argyropoulou A, Hellwig E, Anderson AC, Skaltsounis AL. | Front Microbiol | 10.3389/fmicb.2015.01529 | 2015 | ||
| Metabolism | Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome. | Wang M, Osborn LJ, Jain S, Meng X, Weakley A, Yan J, Massey WJ, Varadharajan V, Horak A, Banerjee R, Allende DS, Chan ER, Hajjar AM, Wang Z, Dimas A, Zhao A, Nagashima K, Cheng AG, Higginbottom S, Hazen SL, Brown JM, Fischbach MA. | Cell | 10.1016/j.cell.2023.05.037 | 2023 | |
| Filifactor alocis--involvement in periodontal biofilms. | Schlafer S, Riep B, Griffen AL, Petrich A, Hubner J, Berning M, Friedmann A, Gobel UB, Moter A. | BMC Microbiol | 10.1186/1471-2180-10-66 | 2010 | ||
| Pathogenicity | In vitro antimicrobial activity of razupenem (SMP-601, PTZ601) against anaerobic bacteria. | Tran CM, Tanaka K, Yamagishi Y, Goto T, Mikamo H, Watanabe K. | Antimicrob Agents Chemother | 10.1128/aac.01038-10 | 2011 | |
| Veillonella, Firmicutes: Microbes disguised as Gram negatives. | Vesth T, Ozen A, Andersen SC, Kaas RS, Lukjancenko O, Bohlin J, Nookaew I, Wassenaar TM, Ussery DW. | Stand Genomic Sci | 10.4056/sigs.2981345 | 2013 | ||
| Polyspecies biofilm formation on implant surfaces with different surface characteristics. | Schmidlin PR, Muller P, Attin T, Wieland M, Hofer D, Guggenheim B. | J Appl Oral Sci | 10.1590/1678-7757201302312 | 2013 | ||
| Pathogenicity | In vitro activity of tomopenem (CS-023/RO4908463) against anaerobic bacteria. | Tanaka K, Mikamo H, Nakao K, Ichiishi T, Goto T, Yamagishi Y, Watanabe K. | Antimicrob Agents Chemother | 10.1128/aac.00595-08 | 2009 | |
| Enzymology | Lactobacilli are prominent in the initial stages of polymicrobial infection of dental pulp. | Nadkarni MA, Simonian MR, Harty DW, Zoellner H, Jacques NA, Hunter N. | J Clin Microbiol | 10.1128/jcm.01912-09 | 2010 | |
| The prevalence of species and strains in the human microbiome: a resource for experimental efforts. | Kraal L, Abubucker S, Kota K, Fischbach MA, Mitreva M. | PLoS One | 10.1371/journal.pone.0097279 | 2014 | ||
| Enzymology | Comparison of culture media and chairside assays for enumerating mutans streptococci. | Hildebrandt GH, Bretz WA. | J Appl Microbiol | 10.1111/j.1365-2672.2006.02877.x | 2006 | |
| Pathogenicity | In vitro antianaerobic activity of DX-619, a new des-fluoro(6) quinolone. | Tanaka K, Mikamo H, Nakao K, Watanabe K. | Antimicrob Agents Chemother | 10.1128/aac.00639-06 | 2006 | |
| Phylogeny | Use of PCR and sodium dodecyl sulfate-polyacrylamide gel electrophoresis techniques for differentiation of Prevotella intermedia sensu stricto and Prevotella nigrescens. | Premaraj T, Kato N, Fukui K, Kato H, Watanabe K. | J Clin Microbiol | 10.1128/jcm.37.4.1057-1061.1999 | 1999 | |
| Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. | Marchesi JR, Sato T, Weightman AJ, Martin TA, Fry JC, Hiom SJ, Dymock D, Wade WG. | Appl Environ Microbiol | 10.1128/aem.64.2.795-799.1998 | 1998 | ||
| Role of Fusobacterium nucleatum and coaggregation in anaerobe survival in planktonic and biofilm oral microbial communities during aeration. | Bradshaw DJ, Marsh PD, Watson GK, Allison C. | Infect Immun | 10.1128/iai.66.10.4729-4732.1998 | 1998 | ||
| Phylogeny | Are putative periodontal pathogens reliable diagnostic markers? | Riep B, Edesi-Neuss L, Claessen F, Skarabis H, Ehmke B, Flemmig TF, Bernimoulin JP, Gobel UB, Moter A. | J Clin Microbiol | 10.1128/jcm.01387-08 | 2009 | |
| Phylogeny | Bacteria associated with spores of the arbuscular mycorrhizal fungi Glomus geosporum and Glomus constrictum. | Roesti D, Ineichen K, Braissant O, Redecker D, Wiemken A, Aragno M. | Appl Environ Microbiol | 10.1128/aem.71.11.6673-6679.2005 | 2005 | |
| Phylogeny | Bioinformatic characterization of the 4-Toluene Sulfonate Uptake Permease (TSUP) family of transmembrane proteins. | Shlykov MA, Zheng WH, Chen JS, Saier MH. | Biochim Biophys Acta | 10.1016/j.bbamem.2011.12.005 | 2012 | |
| Phylogeny | Molecular characterization of subject-specific oral microflora during initial colonization of enamel. | Diaz PI, Chalmers NI, Rickard AH, Kong C, Milburn CL, Palmer RJ, Kolenbrander PE. | Appl Environ Microbiol | 10.1128/aem.72.4.2837-2848.2006 | 2006 | |
| Metabolism | Effects of Streptococcus mutans gtfC deficiency on mixed oral biofilms in vitro. | Thurnheer T, van der Ploeg JR, Giertsen E, Guggenheim B | Caries Res | 10.1159/000091065 | 2006 | |
| Phylogeny | Veillonella nakazawae sp. nov., an anaerobic Gram-negative coccus isolated from the oral cavity of Japanese children. | Mashima I, Theodorea CF, Djais AA, Kunihiro T, Kawamura Y, Otomo M, Saitoh M, Tamai R, Kiyoura Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004583 | 2020 |
| #9045 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20735 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #39804 | ; Curators of the CIP; |
| #60408 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54948 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68367 | Automatically annotated from API 20A . |
| #68380 | Automatically annotated from API rID32A . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #118945 | Collection of Institut Pasteur ; Curators of the CIP; CIP 108002 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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