Name: Dialister succinatiphilus DSM 21274
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17124

Type strain:

Species: Dialister succinatiphilus

Culture col. no.: DSM 21274, JCM 15077, YIT 11850

Strain history: M. Morotomi C6 (=YIT 11850).

NCBI tax ID(s): 742743 (strain), 487173 (species)

Section

Dialister succinatiphilus DSM 21274 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human faeces.

coccus-shaped
Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Veillonellales*
	Family	*Veillonellaceae*
	Genus	*Dialister*
	Species	**Dialister succinatiphilus**
	Full Scientific Name (LPSN)	Dialister succinatiphilus Morotomi et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #31196]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.903

[Ref.: #31196]	Cell length	0.8-2 µm

[Ref.: #31196]	Cell width	0.4-0.9 µm

[Ref.: #31196]	Cell shape	coccus-shaped

[Ref.: #31196]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.665

[Ref.: #31196]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #31196]	growth	37 °C
[Ref.: #31196]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #31196]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31196]			optimum	7
[Ref.: #31196]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31196]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #31196]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986

[Ref.: #31196]

Observation

aggregates in chains

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31196]		lactose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31196]		acid phosphatase	+	3.1.3.2
[Ref.: #31196]		alkaline phosphatase	+	3.1.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15588]	Sample type/isolated from	human faeces
[Ref.: #15588]	Geographic location (country and/or sea, region)	Tokyo
[Ref.: #15588]	Country	Japan
[Ref.: #15588]	Country ISO 3 Code	JPN
[Ref.: #15588]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB370249 (>99% sequence identity) for Dialister succinatiphilus subclade from Microbeatlas

Aquatic Samples	817
Soil Samples	109
Animal Samples	15086
Plant Samples	47
Total Samples	16059

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31196]	Dialister succinatiphilus gene for 16S ribosomal RNA, partial sequence	AB370249	1521	GenBank	742743 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Dialister succinatiphilus YIT 11850	GCA_000242435	scaffold	GenBank	742743 tax ID
[Ref.: #66792]	Dialister succinatiphilus YIT 11850	742743.3	wgs	PATRIC	742743 tax ID	*
[Ref.: #66792]	Dialister succinatiphilus YIT 11850	2513237349	draft	JGI IMG/M	742743 tax ID	*

[Ref.: #15588]	GC-content	51.9 mol%
[Ref.: #67770]	GC-content	50.4 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	51.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dialister succinatiphilus YIT 11850 YIT 11850 NCBI: GCA_000242435.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dialister succinatiphilus YIT 11850 PATRIC: 742743.3
[Ref.: #69480]	motile	no	91.402	yes
[Ref.: #69480]	flagellated	no	95.695	yes
[Ref.: #69480]	gram-positive	no	94.948	yes
[Ref.: #69480]	anaerobic	yes	99.746	no
[Ref.: #69480]	aerobic	no	98.318	no
[Ref.: #69480]	halophile	no	85.738	no
[Ref.: #69480]	spore-forming	no	88.302	yes
[Ref.: #69480]	glucose-util	yes	53.302	no
[Ref.: #69480]	thermophile	no	96.125	yes
[Ref.: #69480]	glucose-ferment	no	56.618	no

Availability in culture collections External links

[Ref.: #15588]

Culture collection no.

DSM 21274, JCM 15077, YIT 11850

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dialister succinatiphilus sp. nov. and Barnesiella intestinihominis sp. nov., isolated from human faeces.	Morotomi M, Nagai F, Sakon H, Tanaka R	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000810-0	2008	*
Phylogeny	Dialister hominis sp. nov., isolated from human faeces.	Sakamoto M, Ikeyama N, Toyoda A, Murakami T, Mori H, Iino T, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003797	2020	*

References

#15588

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21274

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31196

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27523 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27523

IJSEM 2716 2008 ( DOI 10.1099/ijs.0.2008/000810-0 , PubMed 19060046 )

* These data were automatically processed and therefore are not curated

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Dialister succinatiphilus YIT 11850 YIT 11850

Dialister succinatiphilus YIT 11850

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