Name: Tsukamurella paurometabola IMK-9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17098

Type strain:

Species: Tsukamurella paurometabola

Strain Designation: IMK-9

Culture col. no.: DSM 43246, ATCC 25938, DSM 43344, IMET 7373, JCM 3226, KCC A-0226, NCIMB 13124, NCTC 10741, VKM Ac-1228, BCRC 13723, CCM 2630, IMSNU 21161, NRRL B-16960, PCM 2412

Strain history: KCC A-0226 <-- M. Tsukamura 3462 <-- A. Kuse strain Sapporo 609.

NCBI tax ID(s): 42777 (species)

SI-ID 92787

ATCC 25938, NCTC 10741, DSM 43246, DSM 43344, JCM 3226, CCM 2630, CCRC 13723, NCIMB 13124, VKM Ac-1228, BCRC 13723, NRRL B-16960, IMET 7373

Other strains from Tsukamurella paurometabola

T. paurometabola DSM 20162, ATCC 8368, CECT 3055, ... (type strain)
T. paurometabola 3477, M 291, DSM 43345
T. paurometabola NIV, N_I_V, ...
T. paurometabola R 456, DSM 44119, IMRU 1520
T. paurometabola Ridell GB 460, DSM 46042, IMET ...
T. paurometabola 8128, Gdf M296, M296, DSM 46065, ...

Section

Tsukamurella paurometabola IMK-9 is a mesophilic bacterium that was isolated from sputum.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Tsukamurellaceae*
	Genus	*Tsukamurella*
	Species	**Tsukamurella paurometabola**
	Full Scientific Name (LPSN)	Tsukamurella paurometabola corrig. (Steinhaus 1941) Collins et al. 1988

	Synonym	Rhodococcus aurantiacus
	Synonym	Corynebacterium paurometabolum
	Synonym	Tsukamurella paurometabolum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.907

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10902]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #10902]

Culture medium growth

[Ref.: #10902]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10902]

Culture medium composition

expand / minimize

[Ref.: #10902]

Culture medium

GLYCEROL-SOIL MEDIUM (DSMZ Medium 80)

[Ref.: #10902]

Culture medium growth

[Ref.: #10902]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10902]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10902]			growth	37 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #10902]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %95
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986

[Ref.: #67770]

Observation

quinones: MK-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10902]	Sample type/isolated from	sputum

[Ref.: #67770]	Sample type/isolated from	Sputa
* marker position based on {}

Isolation sources categories

#Host Body Product

#Fluids

#Sputum

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Z36933 (>99% sequence identity) for Tsukamurella from Microbeatlas

Aquatic Samples	2978
Soil Samples	3431
Animal Samples	5160
Plant Samples	790
Total Samples	12359

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10902]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	T.paurometabolum gene for 16S ribosomal RNA	Z36933	1476	ENA	2061 tax ID	*
[Ref.: #20218]	Tsukamurella paurometabolum (Rhodococcus aurantiacus) partial 16S rRNA	X53207	1342	ENA	2061 tax ID	*
[Ref.: #20218]	Tsukamurella inchonensis strain ATCC25938 16S ribosomal RNA gene, complete sequence	AF283282	1512	ENA	42777 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tsukamurella paurometabola NCTC10741	GCA_900631615	complete	GenBank	2061 tax ID	*
[Ref.: #66792]	Tsukamurella paurometabola strain NCTC10741	2061.5	complete	PATRIC	2061 tax ID	*
[Ref.: #66792]	Tsukamurella paurometabola NCTC 10741	2867017614	complete	JGI IMG/M	2061 tax ID	*

[Ref.: #67770]

GC-content

72.5 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Tsukamurella paurometabola strain NCTC10741 PATRIC: 2061.5
[Ref.: #69481]	spore-forming	no	95	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tsukamurella paurometabola NCTC10741 NCBI: GCA_900631615.1
[Ref.: #69480]	flagellated	no	97.352	no
[Ref.: #69480]	gram-positive	yes	89.315	no
[Ref.: #69480]	anaerobic	no	99.571	no
[Ref.: #69480]	aerobic	yes	93.332	no
[Ref.: #69480]	halophile	no	93.94	no
[Ref.: #69480]	spore-forming	no	80.955	no
[Ref.: #69480]	thermophile	no	98.988	yes
[Ref.: #69480]	glucose-util	yes	93.065	no
[Ref.: #69480]	motile	no	92.665	no
[Ref.: #69480]	glucose-ferment	no	90.858	no

Availability in culture collections External links

[Ref.: #10902]

Culture collection no.

DSM 43246, ATCC 25938, DSM 43344, IMET 7373, JCM 3226, KCC A-0226, NCIMB 13124, NCTC 10741, VKM Ac-1228, BCRC 13723, CCM 2630, IMSNU 21161, NRRL B-16960, PCM 2412

[Ref.: #86098]

SI-ID 92787

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tsukamurella strandjordae sp. nov., a proposed new species causing sepsis.	Kattar MM, Cookson BT, Carlson LD, Stiglich SK, Schwartz MA, Nguyen TT, Daza R, Wallis CK, Yarfitz SL, Coyle MB	J Clin Microbiol	10.1128/JCM.39.4.1467-1476.2001	2001	*
Pathogenicity	Septic pulmonary emboli caused by Tsukamurella inchonensis: A case report.	Gotoh K, Mayura IPB, Hagiya H, Obata K, Ogawa T, Iio K, Fujimori T, Otsuka F, Matsushita O	J Infect Chemother	10.1016/j.jiac.2020.09.024	2020	*

References

#10902

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43246

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86098

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92787.1 )

* These data were automatically processed and therefore are not curated

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Tsukamurella paurometabola strain NCTC10741

Tsukamurella paurometabola NCTC10741

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