Name: Bifidobacterium indicum C-215
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1700

Type strain:

Species: Bifidobacterium indicum

Strain Designation: C-215

Culture col. no.: CCUG 34986, LMG 18911, DSM 20216, ATCC 25911, JCM 5819, BCRC 14675, CGMCC 1.2279, KCTC 3233, LMG 11584

Strain history: ATCC 25911 <-- V. Scardovi C-215 (Bifidobacterium indicum).

NCBI tax ID(s): 1687 (species)

SI-ID 9632

LMG 11584, ATCC 25911, CCUG 34986, DSM 20216, LMG 18911, JCM 5819, CCRC 14675, KCTC 3233, AS 1.2279, BCRC 14675, CGMCC 1.2279

Special Collections

Other strains from Bifidobacterium indicum

Section

Bifidobacterium indicum C-215 is an anaerobe, Gram-positive bacterium that was isolated from hindgut of honeybee.

Gram-positive
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium indicum**
	Full Scientific Name (LPSN)	Bifidobacterium indicum Scardovi and Trovatelli 1969 (Approved Lists 1980)

Synonym

Bifidobacterium coryneforme

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %96

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8610]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #8610]

Culture medium growth

[Ref.: #8610]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8610]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8610]	growth	37 °C
[Ref.: #52435]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8610]	Oxygen tolerance	anaerobe
[Ref.: #52435]	Oxygen tolerance	anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.546
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #8610]	Murein short key	A11.31
[Ref.: #8610]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #52435]

Fatty acid	Percentage	ECL
C16:0	28.4	16
C18:2 ω6,9c/C18:0 ANTE	22.4	17.724
C18:1 ω9c	18.3	17.769
C18:0	11.3	18
Unidentified	4.8	18.184
C19:0 CYCLO ω9c	4.2	18.87
Unidentified	2.7	19.33
C14:0	2.4	14
C16:1 ω7c	2.2	15.819
C17:0 anteiso	1.7	16.722
C18:1 ω6c	1.6	17.858

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8610]	14580	-	-	-	-	+	-	-	-	-	-	+/-	+	+	-	-	-	-	-	-	-	-	-	-	-	+/-	+	+/-	-	-	-	+	+/-	-	-	-	+	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8610]	14579	-	-	-	-	+	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	+	+	+	+	+	+	+	+	+	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8610]	Sample type/isolated from	hindgut of honeybee

[Ref.: #52435]	Sample type/isolated from	Honeybee hindgut,Apis mellifica caucasica
[Ref.: #52435]	Country	Norway
[Ref.: #52435]	Country ISO 3 Code	NOR
[Ref.: #52435]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Hindgut of honeybee Apis mellifica caucasica
[Ref.: #67770]	Host species	Apis mellifica caucasica
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC071833 (>99% sequence identity) for Bifidobacterium from Microbeatlas

Aquatic Samples	210
Soil Samples	246
Animal Samples	15035
Plant Samples	108
Total Samples	15599

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8610]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium coryneforme gene for 16S ribosomal RNA, partial sequence, strain: JCM 5819	LC071833	1452	GenBank ENA	1687 tax ID
[Ref.: #67770]	Bifidobacterium coryneforme gene for 16S ribosomal RNA, partial sequence	AB437358	1507	GenBank ENA	1687 tax ID
[Ref.: #20218]	Bifidobacterium coryneforme strain ATCC 25911 16S ribosomal RNA gene, partial sequence	M58733	1473	GenBank ENA	1687 tax ID	*
[Ref.: #20218]	Bifidobacterium coryneforme ATCC25911 16S-23S intergenic spacer	U09523	459	GenBank ENA	1687 tax ID	*
[Ref.: #20218]	Bifidobacterium coryneforme strain CCUG 34986 16S ribosomal RNA gene, partial sequence	EF187238	1370	GenBank ENA	1687 tax ID	*
[Ref.: #20218]	Bifidobacterium coryneforme gene for 16S rRNA, partial sequence, strain: JCM 5819	AB116297	475	GenBank ENA	1687 tax ID	*
[Ref.: #20218]	Bifidobacterium coryneforme gene for 16S rRNA, partial sequence, strain: JCM 5819	AB507093	668	GenBank ENA	1687 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium coryneforme DSM 20216	GCA_000771345	contig	GenBank ENA	1437599 tax ID
[Ref.: #66792]	Bifidobacterium coryneforme LMG18911	GCA_000737865	complete	GenBank ENA	1687 tax ID	*
[Ref.: #66792]	Bifidobacterium coryneforme DSM 20216	1437599.3	wgs	PATRIC	1437599 tax ID	*
[Ref.: #66792]	Bifidobacterium coryneforme strain LMG 18911	1687.3	complete	PATRIC	1687 tax ID	*
[Ref.: #66792]	Bifidobacterium coryneforme DSM 20216	2693429521	draft	JGI IMG/M	1437599 tax ID	*
[Ref.: #66792]	Bifidobacterium coryneforme LMG 18911	2597490194	complete	JGI IMG/M	1687 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bifidobacterium coryneforme LMG18911 NCBI: GCA_000737865.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium coryneforme LMG18911 NCBI: GCA_000737865.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.673	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	79.247	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	94.581	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.546	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	96	no

Availability in culture collections External links

[Ref.: #8610]

Culture collection no.

CCUG 34986, LMG 18911, DSM 20216, ATCC 25911, JCM 5819, BCRC 14675, CGMCC 1.2279, KCTC 3233, LMG 11584

[Ref.: #71347]

SI-ID 9632

Literature:

Topic	Title	Authors	Journal	DOI	Year
Cultivation	Bile salt toxicity to some bifidobacteria strains: role of conjugated bile salt hydrolase and pH.	Grill JP, Perrin S, Schneider F	Can J Microbiol	10.1139/w00-066	2000	*

References

#8610

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20216

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#52435 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 34986

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71347

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID9632.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Bifidobacterium indicum in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Bifidobacterium coryneforme LMG18911

Bifidobacterium coryneforme LMG18911

Change proposal

Change proposal