Name: Bifidobacterium choerinum SU806
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1699

Type strain:

Species: Bifidobacterium choerinum

Strain Designation: SU806

Culture col. no.: DSM 20434, ATCC 27686, CCUG 24609, JCM 1212, CGMCC 1.2276, CIP 103378, KCTC 3275, LMG 10510

Strain history: CIP <- 2019, DSMZ <- 1990, DSMZ <- ATCC <- V. Scardovi <- D. Matteuzzi: strain SU806

NCBI tax ID(s): 1121107 (strain), 35760 (species)

SI-ID 13594

LMG 10510, ATCC 27686, CCUG 24609, CIP 103378, DSM 20434, LMG 11085, JCM 1212, KCTC 3275, AS 1.2276, KCTC 3479, CGMCC 1.2276

Other strains from Bifidobacterium choerinum

B. choerinum JCM 7082

Section

Bifidobacterium choerinum SU806 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from piglet faeces.

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium choerinum**
	Full Scientific Name (LPSN)	Bifidobacterium choerinum Scardovi et al. 1979 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #118249]	Gram stain	positive

[Ref.: #118249]	Cell shape	rod-shaped

[Ref.: #118249]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8810]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #8810]

Culture medium growth

[Ref.: #8810]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8810]

Culture medium composition

expand / minimize

[Ref.: #118249]

Culture medium

CIP Medium 20

[Ref.: #118249]

Culture medium growth

[Ref.: #118249]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #8810]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #8810]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8810]

Oxygen tolerance

anaerobe

[Ref.: #8810]	Murein short key	A11.21
[Ref.: #8810]	Murein types	A3alpha L-Lys(L-Orn)-L-Ala(L-Ser)-L-Ala₂

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8810]	14656	-	-	-	-	-	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8810]	Sample type/isolated from	piglet faeces

[Ref.: #47994]	Sample type/isolated from	Swine feces
[Ref.: #47994]	Sampling date	1989-05-02

[Ref.: #67770]	Sample type/isolated from	Pig feces

[Ref.: #118249]	Sample type/isolated from	Animal, Piglet, feces
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Suidae (Pig,Swine)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC071800 (>99% sequence identity) for Bifidobacterium from Microbeatlas

Aquatic Samples	231
Soil Samples	410
Animal Samples	41508
Plant Samples	132
Total Samples	42281

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8810]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118249]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium choerinum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1212	LC071800	1466	ENA	35760 tax ID
[Ref.: #20218]	Bifidobacterium choerinum gene for 16S rRNA, partial sequence, strain: ATCC 27686	D86186	1530	ENA	35760 tax ID	*
[Ref.: #20218]	Bifidobacterium choerinum 16S-23S rRNA intergenic spacer region	L36968	552	ENA	35760 tax ID	*
[Ref.: #20218]	Bifidobacterium choerinum strain DSM 20434 16S ribosomal RNA gene, partial sequence	GQ487638	148	ENA	35760 tax ID	*
[Ref.: #20218]	Bifidobacterium choerinum gene for 16S rRNA, partial sequence, strain: JCM 1212	AB116296	489	ENA	35760 tax ID	*
[Ref.: #20218]	Bifidobacterium choerinum gene for 16S rRNA, partial sequence, strain: JCM 1212	AB507092	658	ENA	35760 tax ID	*
[Ref.: #20218]	Bifidobacterium choerinum strain KCTC 3275 16S ribosomal RNA gene, partial sequence	GU361817	1494	ENA	35760 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium choerinum DSM 20434	GCA_000771425	contig	GenBank	1121107 tax ID
[Ref.: #67770]	Bifidobacterium choerinum LMG 10510	GCA_000741135	contig	GenBank	35760 tax ID
[Ref.: #67770]	Bifidobacterium choerinum DSM 20434	GCA_000484675	contig	GenBank	1121107 tax ID
[Ref.: #66792]	Bifidobacterium choerinum strain LMG 10510	35760.3	wgs	PATRIC	35760 tax ID	*
[Ref.: #66792]	Bifidobacterium choerinum DSM 20434	2529292584	draft	JGI IMG/M	1121107 tax ID	*
[Ref.: #66792]	Bifidobacterium choerinum LMG 10510	2597490261	draft	JGI IMG/M	35760 tax ID	*

[Ref.: #8810]

GC-content

66.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium choerinum DSM 20434 PATRIC: 1121107.3
[Ref.: #69480]	motile	no	94.54	no
[Ref.: #69480]	flagellated	no	97.228	no
[Ref.: #69480]	gram-positive	yes	88.994	no
[Ref.: #69480]	anaerobic	yes	98.495	yes
[Ref.: #69480]	aerobic	no	97.759	yes
[Ref.: #69480]	halophile	no	70.184	no
[Ref.: #69480]	spore-forming	no	96.69	no
[Ref.: #69480]	thermophile	no	95.533	yes
[Ref.: #69480]	glucose-util	yes	83.511	no
[Ref.: #69480]	glucose-ferment	yes	79.585	no

Availability in culture collections External links

[Ref.: #8810]

Culture collection no.

DSM 20434, ATCC 27686, CCUG 24609, JCM 1212, CGMCC 1.2276, CIP 103378, KCTC 3275, LMG 10510

[Ref.: #71346]

SI-ID 13594

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.	Duranti S, Lugli GA, Napoli S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003306	2019	*
Phylogeny	Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov.	Lugli GA, Mangifesta M, Duranti S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M	Syst Appl Microbiol	10.1016/j.syapm.2018.01.002	2018	*

References

#8810

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20434

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#47994 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 24609

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71346

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13594.1 )

#118249 Collection of Institut Pasteur ; Curators of the CIP; CIP 103378
* These data were automatically processed and therefore are not curated

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Bifidobacterium choerinum DSM 20434

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