Bifidobacterium indicum (DSM 20214, ATCC 25912, CCUG 34985)

Name: Bifidobacterium indicum (DSM 20214, ATCC 25912, CCUG 34985)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1707

Type strain

Strain Designation C 410

Culture col. no. DSM 20214 ATCC 25912 CCUG 34985 C 410 LMG 11587 4 more

NCBI tax ID(s) 1691

Special Collections DSMZ CCUG JCM KCTC

History DSMZ <- V. Scardovi, C 410 JCM <-- ATCC 25912 <-- V. Scardovi C410.

Links

Bifidobacterium indicum C 410 is an anaerobe bacterium that was isolated from hindgut of honeybee.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 9639

LMG 11587,ATCC 25912,CCUG 34985,DSM 20214,JCM 1302,CCRC 14674,KCTC 3230,AS 1.2275,BCRC 14674,CGMCC 1.2275,LMG 27437

@ref 20215

Last LPSN update 2026-05-29 08:25:19

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium indicum

Full scientific name Bifidobacterium indicum Scardovi and Trovatelli 1969 (Approved Lists 1980)

Synonyms (1)

Bifidobacterium coryneforme

BacDive ID	Other strains from **Bifidobacterium indicum** (1)	Type strain
1700	B. indicum C-215, CCUG 34986, LMG 18911, DSM 20216, ...

Morphology

Cell morphology

@ref	Motility	Confidence
125438		96.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8483	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)		Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8483	positive	growth	37
52434	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
8483	anaerobe
52434	anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		98.119

Murein

@ref	Murein short key	Type
8483	A11.31	A4alpha L-Lys-D-Asp

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	photosynthesis	85.71	12 of 14
66794	pentose phosphate pathway	81.82	9 of 11
66794	valine metabolism	77.78	7 of 9
66794	palmitate biosynthesis	77.27	17 of 22
66794	acetate fermentation	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	Entner Doudoroff pathway	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	degradation of sugar alcohols	68.75	11 of 16
66794	acetoin degradation	66.67	2 of 3
66794	purine metabolism	65.96	62 of 94
66794	glycolysis	64.71	11 of 17
66794	d-xylose degradation	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	NAD metabolism	61.11	11 of 18
66794	lipoate biosynthesis	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	pyrimidine metabolism	57.78	26 of 45
66794	methionine metabolism	57.69	15 of 26
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	oxidative phosphorylation	57.14	52 of 91
66794	d-mannose degradation	55.56	5 of 9
66794	histidine metabolism	55.17	16 of 29
66794	metabolism of disaccharids	54.55	6 of 11
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	cysteine metabolism	50	9 of 18
66794	glycogen biosynthesis	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	citric acid cycle	50	7 of 14
66794	adipate degradation	50	1 of 2
66794	glutamate and glutamine metabolism	50	14 of 28
66794	coenzyme A metabolism	50	2 of 4
66794	alanine metabolism	48.28	14 of 29
66794	degradation of pentoses	46.43	13 of 28
66794	leucine metabolism	46.15	6 of 13
66794	vitamin B1 metabolism	46.15	6 of 13
66794	arginine metabolism	45.83	11 of 24
66794	proline metabolism	45.45	5 of 11
66794	non-pathway related	44.74	17 of 38
66794	serine metabolism	44.44	4 of 9
66794	propanol degradation	42.86	3 of 7
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	lysine metabolism	42.86	18 of 42
66794	tryptophan metabolism	42.11	16 of 38
66794	degradation of sugar acids	40	10 of 25
66794	glycine metabolism	40	4 of 10
66794	cellulose degradation	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	urea cycle	38.46	5 of 13
66794	glutathione metabolism	35.71	5 of 14
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	flavin biosynthesis	33.33	5 of 15
66794	lipid metabolism	32.26	10 of 31
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	starch degradation	30	3 of 10
66794	tyrosine metabolism	28.57	4 of 14
66794	cholesterol biosynthesis	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	vitamin B6 metabolism	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	butanoate fermentation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	sulfate reduction	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	lipid A biosynthesis	22.22	2 of 9

Fatty acid profile

Metadata FA analysis

@ref

52434

Fatty acid	Percentage	ECL
C18:1 ω9c	26.2	17.769
C16:0	24.4	16
C18:2 ω6,9c/C18:0 ANTE	16.7	17.724
C18:0	11.2	18
C19:0 CYCLO ω9c	6.9	18.87
C17:0 iso 3OH	3.2	18.161
C16:1 ω7c	3	15.819
C14:0	2.9	14
Unidentified	1.2	19.315
C17:0 anteiso	1.1	16.722
C17:0 CYCLO	0.8	16.888
C17:1 ω8c	0.8	16.792
C17:0	0.7	17
C16:1 ω9c	0.5	15.774
C12:0	0.5	12

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
8483	-	-	-	-	+	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	+	+	+	+	+	+	-	+	+	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-
8483	-	-	-	-	+	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	+	+	+	+	+	-	-	-	+	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

Isolation

@ref	Sample type
8483	hindgut of honeybee
52434	Honeybee hindgut
67770	Hindgut of honeybee

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8483	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM70676v1 assembly for Bifidobacterium [indicum] DSM 20214 = LMG 11587	complete	GCA_000706765	1341694.4	2802429577	1341694	97.31
124043	ASM3698697v1 assembly for Bifidobacterium coryneforme DSM 20214	contig	GCA_036986975	1691.31		1687	75.64
124043	ASM3698705v1 assembly for Bifidobacterium coryneforme CCUG 34985	contig	GCA_036987055	1691.32		1687	75.64
124043	ASM3698701v1 assembly for Bifidobacterium indicum ATCC 25912	contig	GCA_036987015	1691.29		1691	73.81
124043	ASM3698703v1 assembly for Bifidobacterium indicum KCTC 3230	contig	GCA_036987035	1691.34		1691	73.38
124043	ASM3698695v1 assembly for Bifidobacterium indicum CGMCC 1.2275	contig	GCA_036986955	1691.27		1691	72.78
124043	ASM3698693v1 assembly for Bifidobacterium indicum JCM 1302	contig	GCA_036986935	1691.28		1691	71.67
67770	DSM-20214 assembly for Bifidobacterium [indicum] DSM 20214 = LMG 11587	contig	GCA_000771325	1341694.3	2660238275	1341694	71.51
124043	ASM3698691v1 assembly for Bifidobacterium indicum JCM 1302	contig	GCA_036986915	1691.30		1691	71.47

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Bifidobacterium indicum 16S ribosomal RNA	M58737	1477	1691
20218	Bifidobacterium indicum ATCC 25912 16S-23S intergenic spacer, partial sequence	U09791	471	1691
20218	Bifidobacterium indicum gene for 16S rRNA, partial sequence, strain: JCM 1302	AB116303	475	1691
20218	Bifidobacterium indicum gene for 16S rRNA, partial sequence, strain: JCM 1302	AB507099	663	1691
20218	Bifidobacterium indicum gene for 16S rRNA, partial sequence, strain: JCM 1302	D86188	1514	1691
20218	Bifidobacterium indicum strain KCTC 3230 16S ribosomal RNA gene, partial sequence	GU361822	1477	1691
67770	Bifidobacterium indicum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1302	LC071807	1423	1691

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM70676v1 assembly for Bifidobacterium [indicum] DSM 20214 = LMG 11587
BV-BRC: 1341694.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	89.73	no
125439	gram_stain	BacteriaNetⓘ	positive	55.05	no
125439	motility	BacteriaNetⓘ	no	70.98	no
125439	spore_formation	BacteriaNetⓘ	no	98.12	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium indicum LMG 11587 = DSM 20214 LMG 11587
NCBI: GCA_000706765.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	84.67	no
125438	anaerobic	anaerobicⓘ	yes	76.77	yes
125438	aerobic	aerobicⓘ	no	93.03	no
125438	spore-forming	spore-formingⓘ	no	89.55	no
125438	thermophilic	thermophileⓘ	no	95.50	yes
125438	flagellated	motile2+ⓘ	no	96.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The Type Strain of Bifidobacterium indicum Scardovi and Trovatelli 1969 (Approved Lists 1980) is ATCC 25912, not DSM 20214, and Rejection to Reclassify Bifidobacterium coryneforme as Bifidobacterium indicum.	Jiang CS, Li CY, Gu CT.	Curr Microbiol	10.1007/s00284-024-03712-x	2024
	Vairimorpha (Nosema) ceranae can promote Serratia development in honeybee gut: an underrated threat for bees?	Braglia C, Alberoni D, Garrido PM, Porrini MP, Baffoni L, Scott D, Eguaras MJ, Di Gioia D, Mifsud D.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1323157	2024
	Beneficial Bacteria and Plant Extracts Promote Honey Bee Health and Reduce Nosema ceranae Infection.	Garrido PM, Porrini MP, Alberoni D, Baffoni L, Scott D, Mifsud D, Eguaras MJ, Di Gioia D.	Probiotics Antimicrob Proteins	10.1007/s12602-022-10025-7	2024
Phylogeny	Identification of species belonging to the Bifidobacterium genus by PCR-RFLP analysis of a hsp60 gene fragment.	Baffoni L, Stenico V, Strahsburger E, Gaggia F, Di Gioia D, Modesto M, Mattarelli P, Biavati B.	BMC Microbiol	10.1186/1471-2180-13-149	2013
Enzymology	Species-specific oligonucleotide probes for five Bifidobacterium species detected in human intestinal microflora.	Yamamoto T, Morotomi M, Tanaka R.	Appl Environ Microbiol	10.1128/aem.58.12.4076-4079.1992	1992
Metabolism	Diversity, ecology and intestinal function of bifidobacteria.	Bottacini F, Ventura M, van Sinderen D, O'Connell Motherway M.	Microb Cell Fact	10.1186/1475-2859-13-s1-s4	2014
Enzymology	Detection of Bifidobacterium animalis subsp. lactis (Bb12) in the intestine after feeding of sows and their piglets.	Solano-Aguilar G, Dawson H, Restrepo M, Andrews K, Vinyard B, Urban JF.	Appl Environ Microbiol	10.1128/aem.00309-08	2008
Enzymology	Aldolase of lactic acid bacteria: a case history in the use of an enzyme as an evolutionary marker.	London J, Kline K.	Bacteriol Rev	10.1128/br.37.4.453-478.1973	1973
	Exploring the biodiversity of Bifidobacterium asteroides among honey bee microbiomes.	Lugli GA, Fontana F, Tarracchini C, Mancabelli L, Milani C, Turroni F, Ventura M.	Environ Microbiol	10.1111/1462-2920.16223	2022
	Effects of a supplemented diet containing 7 probiotic strains (Honeybeeotic) on honeybee physiology and immune response: analysis of hemolymph cytology, phenoloxidase activity, and gut microbiome.	Robino P, Galosi L, Bellato A, Vincenzetti S, Gonella E, Ferrocino I, Serri E, Biagini L, Roncarati A, Nebbia P, Menzio C, Rossi G.	Biol Res	10.1186/s40659-024-00533-x	2024
	Revisiting the role of pathogen diversity and microbial interactions in honeybee susceptibility and treatment of Melissococcus plutonius infection.	Mallory E, Freeze G, Daisley BA, Allen-Vercoe E.	Front Vet Sci	10.3389/fvets.2024.1495010	2024
Genetics	Natural diversity of the honey bee (Apis mellifera) gut bacteriome in various climatic and seasonal states.	Papp M, Bekesi L, Farkas R, Makrai L, Judge MF, Maroti G, Tozser D, Solymosi N.	PLoS One	10.1371/journal.pone.0273844	2022
	Prevalence of Antibiotic Resistance Genes among Human Gut-Derived Bifidobacteria.	Duranti S, Lugli GA, Mancabelli L, Turroni F, Milani C, Mangifesta M, Ferrario C, Anzalone R, Viappiani A, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.02894-16	2017
	Honeybees Exposure to Natural Feed Additives: How Is the Gut Microbiota Affected?	Alberoni D, Baffoni L, Braglia C, Gaggia F, Di Gioia D.	Microorganisms	10.3390/microorganisms9051009	2021
	Geographical and Seasonal Analysis of the Honeybee Microbiome.	Almeida EL, Ribiere C, Frei W, Kenny D, Coffey MF, O'Toole PW.	Microb Ecol	10.1007/s00248-022-01986-x	2023
Genetics	Genome-Wide Assessment of Stress-Associated Genes in Bifidobacteria.	Schopping M, Vesth T, Jensen K, Franzen CJ, Zeidan AA.	Appl Environ Microbiol	10.1128/aem.02251-21	2022
	Changes in gut microbiota and metabolism associated with phenotypic plasticity in the honey bee Apis mellifera.	Copeland DC, Maes PW, Mott BM, Anderson KE.	Front Microbiol	10.3389/fmicb.2022.1059001	2022
Phylogeny	Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics.	Lugli GA, Milani C, Turroni F, Duranti S, Ferrario C, Viappiani A, Mancabelli L, Mangifesta M, Taminiau B, Delcenserie V, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.02004-14	2014
Genetics	Comparative genomic and phylogenomic analyses of the Bifidobacteriaceae family.	Lugli GA, Milani C, Turroni F, Duranti S, Mancabelli L, Mangifesta M, Ferrario C, Modesto M, Mattarelli P, Jiri K, van Sinderen D, Ventura M.	BMC Genomics	10.1186/s12864-017-3955-4	2017
Enzymology	The presence of bifidobacteria in social insects, fish and reptiles.	Kopecny J, Mrazek J, Killer J.	Folia Microbiol (Praha)	10.1007/s12223-010-0053-2	2010
Phylogeny	Diversity and abundance of the bacterial 16S rRNA gene sequences in forestomach of alpacas (Lama pacos) and sheep (Ovis aries).	Pei CX, Liu Q, Dong CS, Li H, Jiang JB, Gao WJ.	Anaerobe	10.1016/j.anaerobe.2010.06.004	2010
Genetics	Characterization of Bifidobacterium asteroides Isolates.	Pino A, Benkaddour B, Inturri R, Amico P, Vaccaro SC, Russo N, Vaccalluzzo A, Agolino G, Caggia C, Miloud H, Randazzo CL.	Microorganisms	10.3390/microorganisms10030655	2022
Phylogeny	Phylogenetic Analysis of the Bifidobacterium Genus Using Glycolysis Enzyme Sequences.	Brandt K, Barrangou R.	Front Microbiol	10.3389/fmicb.2016.00657	2016
Pathogenicity	Honeybee Exposure to Veterinary Drugs: How Is the Gut Microbiota Affected?	Baffoni L, Alberoni D, Gaggia F, Braglia C, Stanton C, Ross PR, Di Gioia D.	Microbiol Spectr	10.1128/spectrum.00176-21	2021
Pathogenicity	Exploring the Ecology of Bifidobacteria and Their Genetic Adaptation to the Mammalian Gut.	Duranti S, Longhi G, Ventura M, van Sinderen D, Turroni F.	Microorganisms	10.3390/microorganisms9010008	2020
	The genus bifidobacterium: From genomics to functionality of an important component of the mammalian gut microbiota running title: Bifidobacterial adaptation to and interaction with the host.	Alessandri G, van Sinderen D, Ventura M.	Comput Struct Biotechnol J	10.1016/j.csbj.2021.03.006	2021
Phylogeny	Genomic encyclopedia of type strains of the genus Bifidobacterium.	Milani C, Lugli GA, Duranti S, Turroni F, Bottacini F, Mangifesta M, Sanchez B, Viappiani A, Mancabelli L, Taminiau B, Delcenserie V, Barrangou R, Margolles A, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.02308-14	2014
	[The intestinal microflora of persons subjected to a radiation lesion].	Sudenko VI, Nagornaia SS, Groma LI.	Mikrobiol Zh (1978)		1992
Phylogeny	Unveiling bifidobacterial biogeography across the mammalian branch of the tree of life.	Milani C, Mangifesta M, Mancabelli L, Lugli GA, James K, Duranti S, Turroni F, Ferrario C, Ossiprandi MC, van Sinderen D, Ventura M.	ISME J	10.1038/ismej.2017.138	2017
Metabolism	Elucidating and Regulating the Acetoin Production Role of Microbial Functional Groups in Multispecies Acetic Acid Fermentation.	Lu ZM, Liu N, Wang LJ, Wu LH, Gong JS, Yu YJ, Li GQ, Shi JS, Xu ZH.	Appl Environ Microbiol	10.1128/aem.01331-16	2016
Genetics	Genomics of the Genus Bifidobacterium Reveals Species-Specific Adaptation to the Glycan-Rich Gut Environment.	Milani C, Turroni F, Duranti S, Lugli GA, Mancabelli L, Ferrario C, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.03500-15	2016
	Discovery of a conjugative megaplasmid in Bifidobacterium breve.	Bottacini F, O'Connell Motherway M, Casey E, McDonnell B, Mahony J, Ventura M, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.02871-14	2015
Enzymology	Fluorescence in situ Hybridization method using Peptide Nucleic Acid probes for rapid detection of Lactobacillus and Gardnerella spp.	Machado A, Almeida C, Almeida C, Salgueiro D, Henriques A, Vaneechoutte M, Haesebrouck F, Vieira MJ, Rodrigues L, Azevedo NF, Cerca N.	BMC Microbiol	10.1186/1471-2180-13-82	2013
Genetics	Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut.	Bottacini F, Milani C, Turroni F, Sanchez B, Foroni E, Duranti S, Serafini F, Viappiani A, Strati F, Ferrarini A, Delledonne M, Henrissat B, Coutinho P, Fitzgerald GF, Margolles A, van Sinderen D, Ventura M.	PLoS One	10.1371/journal.pone.0044229	2012
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
	Designing primers and evaluation of the efficiency of propidium monoazide - Quantitative polymerase chain reaction for counting the viable cells of Lactobacillus gasseri and Lactobacillus salivarius.	Lai CH, Wu SR, Pang JC, Ramireddy L, Chiang YC, Lin CK, Tsen HY.	J Food Drug Anal	10.1016/j.jfda.2016.10.004	2017
	Bifidobacterium mizhiense sp. nov., isolated from the gut of honeybee (Apis mellifera).	Li TT, Zhang HX, Gu CT.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005390	2022
Phylogeny	Bombiscardovia coagulans gen. nov., sp. nov., a new member of the family Bifidobacteriaceae isolated from the digestive tract of bumblebees.	Killer J, Kopecny J, Mrazek J, Havlik J, Koppova I, Benada O, Rada V, Kofronova O	Syst Appl Microbiol	10.1016/j.syapm.2010.08.002	2010

References

#8483	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20214
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#52434	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 34985
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bifidobacterium indicum (DSM 20214, ATCC 25912, CCUG 34985)

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