Name: Variimorphobacter saccharofermentans MD1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 169769

Type strain:

Species: Variimorphobacter saccharofermentans

Strain Designation: MD1

Culture col. no.: DSM 110715, JCM 39125

Strain history: <- R. Rettenmaier, TU Munich, Freising-Weihenstephan, Germany; MD1 <- R. Rettenmaier {2019}

SI-ID 404574

DSM 110715

Section

Variimorphobacter saccharofermentans MD1 is a thermophilic bacterium that was isolated from silage of 80% maize and 20% gras.

thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Variimorphobacter*
	Species	**Variimorphobacter saccharofermentans**
	Full Scientific Name (LPSN)	Variimorphobacter saccharofermentans Rettenmaier et al. 2021

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69189]

Culture medium

CLOSTRIDIUM (GS) MEDIUM (DSMZ Medium 255)

[Ref.: #69189]

Culture medium growth

[Ref.: #69189]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #69189]			growth	40 °C

[Ref.: #69189]

Temperature range

thermophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69189]	Sample type/isolated from	silage of 80% maize and 20% gras
[Ref.: #69189]	Geographic location (country and/or sea, region)	Freising, Eggertshofen, Biogas Plant
[Ref.: #69189]	Country	Germany
[Ref.: #69189]	Country ISO 3 Code	DEU
[Ref.: #69189]	Continent	Europe
[Ref.: #69189]	Geographic location	48.3580°/11.7175°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #69189]	Variimorphobacter saccharofermentans strain MD1 16S ribosomal RNA gene, partial sequence	MW180938	1451	ENA	2755051 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Variimorphobacter saccharofermentans MD1	GCA_014174405	contig	GenBank	2755051 tax ID	*
[Ref.: #66792]	Lachnospiraceae bacterium MD1	2755051.3	wgs	PATRIC	2755051 tax ID	*

[Ref.: #69189]

GC-content

38.5 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lachnospiraceae bacterium MD1 PATRIC: 2755051.3
[Ref.: #69480]	motile	yes	81.959	no
[Ref.: #69480]	gram-positive	yes	63.455	no
[Ref.: #69480]	anaerobic	yes	98.934	no
[Ref.: #69480]	halophile	no	93.219	no
[Ref.: #69480]	spore-forming	yes	91.302	no
[Ref.: #69480]	glucose-util	yes	89.081	no
[Ref.: #69480]	flagellated	no	59.78	no
[Ref.: #69480]	aerobic	no	98.476	no
[Ref.: #69480]	thermophile	yes	52.363	yes
[Ref.: #69480]	glucose-ferment	yes	67.54	no

Availability in culture collections External links

[Ref.: #69189]

Culture collection no.

DSM 110715, JCM 39125

[Ref.: #115910]

SI-ID 404574

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Variimorphobacter saccharofermentans gen. nov., sp. nov., a new member of the family Lachnospiraceae, isolated from a maize-fed biogas fermenter.	Rettenmaier R, Thieme N, Streubel J, Di Bello L, Kowollik ML, Huang L, Maus I, Klingl A, Liebl W, Zverlov VV	Int J Syst Evol Microbiol	10.1099/ijsem.0.005044	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69189

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110715

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#115910

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404574.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Variimorphobacter saccharofermentans in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Lachnospiraceae bacterium MD1

Change proposal

Change proposal