Name: Variimorphobacter saccharofermentans MD1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 169769

Type strain:

Species: Variimorphobacter saccharofermentans

Strain Designation: MD1

Culture col. no.: DSM 110715, JCM 39125

Strain history: <- R. Rettenmaier, TU Munich, Freising-Weihenstephan, Germany; MD1 <- R. Rettenmaier {2019}

NCBI tax ID(s): 2755051 (species)

SI-ID 404574

DSM 110715

Special Collections

JCM
DSMZ

Section

Variimorphobacter saccharofermentans MD1 is an anaerobe, spore-forming bacterium that was isolated from silage of 80% maize and 20% gras.

spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Variimorphobacter*
	Species	**Variimorphobacter saccharofermentans**
	Full Scientific Name (LPSN)	Variimorphobacter saccharofermentans Rettenmaier et al. 2021

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69189]

Culture medium

CLOSTRIDIUM (GS) MEDIUM (DSMZ Medium 255)

[Ref.: #69189]

Culture medium growth

[Ref.: #69189]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #69189]			growth	40 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69189]	Sample type/isolated from	silage of 80% maize and 20% gras
[Ref.: #69189]	Geographic location (country and/or sea, region)	Freising, Eggertshofen, Biogas Plant
[Ref.: #69189]	Country	Germany
[Ref.: #69189]	Country ISO 3 Code	DEU
[Ref.: #69189]	Continent	Europe
[Ref.: #69189]	Geographic location	48.3580°/11.7175°
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #69189]	Variimorphobacter saccharofermentans strain MD1 16S ribosomal RNA gene, partial sequence	MW180938	1451	GenBank ENA	2755051 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Variimorphobacter saccharofermentans MD1	GCA_014174405	contig	GenBank ENA	2755051 tax ID	*
[Ref.: #66792]	Lachnospiraceae bacterium MD1	2755051.3	wgs	PATRIC	2755051 tax ID	*

[Ref.: #69189]

GC-content

38.5 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lachnospiraceae bacterium MD1 PATRIC: 2755051.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	64.924	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	87.947	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	60.135	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	94.374	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	80.176	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.454	no

Availability in culture collections External links

[Ref.: #69189]

Culture collection no.

DSM 110715, JCM 39125

[Ref.: #115910]

SI-ID 404574

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Variimorphobacter saccharofermentans gen. nov., sp. nov., a new member of the family Lachnospiraceae, isolated from a maize-fed biogas fermenter.	Rettenmaier R, Thieme N, Streubel J, Di Bello L, Kowollik ML, Huang L, Maus I, Klingl A, Liebl W, Zverlov VV	Int J Syst Evol Microbiol	10.1099/ijsem.0.005044	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69189

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110715

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#115910

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404574.1 )

* These data were automatically processed and therefore are not curated

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Lachnospiraceae bacterium MD1

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