Name: Thermococcus aggregans TY
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16874

Type strain:

Species: Thermococcus aggregans

Strain Designation: TY

Culture col. no.: DSM 12819, DSM 10597, JCM 10137

Strain history: F. Canganella TY.

NCBI tax ID(s): 110163 (species)

SI-ID 49367

DSM 12819, JCM 10137, DSM 10597

Special Collections

DSMZ
JCM

Section

When using BacDive for research please cite our paper

Thermococcus aggregans TY is an anaerobe, hyperthermophilic archaeon that was isolated from hydrothermal vent site .

anaerobe
hyperthermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Thermococci*
	Order	*Thermococcales*
	Family	*Thermococcaceae*
	Genus	*Thermococcus*
	Species	**Thermococcus aggregans**
	Full Scientific Name (LPSN)	Thermococcus aggregans Canganella et al. 1998

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4834]

Culture medium

MARINE THERMOCOCCUS MEDIUM (DSMZ Medium 760)

[Ref.: #4834]

Culture medium growth

[Ref.: #4834]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4834]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4834]			growth	85 °C
[Ref.: #67770]			growth	85 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4834]

Oxygen tolerance

anaerobe

[Ref.: #125438]

Ability of spore formation

no Confidence in %91.266

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4834]	Sample type/isolated from	hydrothermal vent site (2000 m)
[Ref.: #4834]	Geographic location (country and/or sea, region)	Gulf of California, Guaymas Basin
[Ref.: #4834]	Country	USA
[Ref.: #4834]	Country ISO 3 Code	USA
[Ref.: #4834]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Guaymas Basin hydrothermal vent
[Ref.: #67770]	Geographic location (country and/or sea, region)	Gulf of California
[Ref.: #67770]	Country	Pacific Ocean
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y08384 (>99% sequence identity) for Thermococcus from Microbeatlas

Aquatic Samples	2
Soil Samples
Animal Samples
Plant Samples
Total Samples	2

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4834]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4834]	Thermococcus aggregans 16S rRNA gene, strain DSM 10597	Y08384	1301	GenBank ENA	110163 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermococcus aggregans TY	GCA_024022995	chromosome	GenBank ENA	110163 tax ID	*

[Ref.: #4834]	GC-content	42 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	42 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thermococcus aggregans TY NCBI: GCA_024022995.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	66.468	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	87.903	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	86.042	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	91.266	no
[Ref.: #125438]	thermophile	thermophilicⓘ	yes	76.524	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	78.208	no

Availability in culture collections External links

[Ref.: #4834]

Culture collection no.

DSM 12819, DSM 10597, JCM 10137

[Ref.: #85882]

SI-ID 49367

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermococcus guaymasensis sp. nov. and Thermococcus aggregans sp. nov., two novel thermophilic archaea isolated from the Guaymas Basin hydrothermal vent site.	Canganella F, Jones WJ, Gambacorta A, Antranikian G	Int J Syst Bacteriol	10.1099/00207713-48-4-1181	1998	*

References

#4834

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12819

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85882

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49367.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

* These data were automatically processed and therefore are not curated

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