Name: Thermococcus guaymasensis TYS
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16875

Type strain:

Species: Thermococcus guaymasensis

Strain Designation: TYS

Culture col. no.: DSM 11113, JCM 10136

Strain history: F. Canganella TYS.

NCBI tax ID(s): 1432656 (strain), 110164 (species)

SI-ID 49036

DSM 11113, JCM 10136

Special Collections

DSMZ
JCM

Section

When using BacDive for research please cite our paper

Thermococcus guaymasensis TYS is an anaerobe, hyperthermophilic archaeon that was isolated from hydrothermal vent site .

anaerobe
hyperthermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Thermococci*
	Order	*Thermococcales*
	Family	*Thermococcaceae*
	Genus	*Thermococcus*
	Species	**Thermococcus guaymasensis**
	Full Scientific Name (LPSN)	Thermococcus guaymasensis Canganella et al. 1998

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	85 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4208]	Oxygen tolerance	anaerobe
[Ref.: #125439]	Oxygen tolerance	anaerobe Confidence in %99.9

[Ref.: #125438]

Ability of spore formation

no Confidence in %90.997

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4208]	Sample type/isolated from	hydrothermal vent site (2000 m)
[Ref.: #4208]	Geographic location (country and/or sea, region)	Gulf of California, Guaymas Basin
[Ref.: #4208]	Country	USA
[Ref.: #4208]	Country ISO 3 Code	USA
[Ref.: #4208]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Guaymas Basin hydrothermal vent
[Ref.: #67770]	Geographic location (country and/or sea, region)	Gulf of California
[Ref.: #67770]	Country	Pacific Ocean
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY099178 (>99% sequence identity) for Thermococcus from Microbeatlas

Aquatic Samples	25
Soil Samples	2
Animal Samples
Plant Samples
Total Samples	27

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4208]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Thermococcus guaymasensis strain DSM 11113 16S ribosomal RNA gene, partial sequence	AY099178	1432	GenBank ENA	110164 tax ID	*
[Ref.: #20218]	Thermococcus guaymasensis strain DSM 11113 16S-23S ribosomal RNA intergenic spacer region, complete sequence	AY099214	182	GenBank ENA	110164 tax ID	*
[Ref.: #20218]	Thermococcus guaymasensis culture DSM:11113 16S ribosomal RNA gene, partial sequence	JQ346762	1269	GenBank ENA	110164 tax ID	*
[Ref.: #20218]	Thermococcus guaymasensis 16S rRNA gene, strain DSM 11113	Y08385	1299	GenBank ENA	110164 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermococcus guaymasensis DSM 11113	GCA_000816105	complete	GenBank ENA	1432656 tax ID	*
[Ref.: #66792]	Thermococcus guaymasensis DSM 11113	2681812990	complete	JGI IMG/M	1432656 tax ID	*
[Ref.: #66792]	Thermococcus guaymasensis DSM 11113	1432656.3	complete	PATRIC	1432656 tax ID	*

[Ref.: #67770]

GC-content

46 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thermococcus guaymasensis DSM 11113 DSM 11113 NCBI: GCA_000816105.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	65.317	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	87.136	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	87.117	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	90.997	no
[Ref.: #125438]	thermophile	thermophilicⓘ	yes	84.878	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	77.958	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thermococcus guaymasensis DSM 11113 NCBI: GCA_000816105
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	80.7
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	63.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	81.6
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	99.9

Availability in culture collections External links

[Ref.: #4208]

Culture collection no.

DSM 11113, JCM 10136

[Ref.: #85883]

SI-ID 49036

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermococcus guaymasensis sp. nov. and Thermococcus aggregans sp. nov., two novel thermophilic archaea isolated from the Guaymas Basin hydrothermal vent site.	Canganella F, Jones WJ, Gambacorta A, Antranikian G	Int J Syst Bacteriol	10.1099/00207713-48-4-1181	1998	*

References

#4208

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11113

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85883

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49036.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Thermococcus guaymasensis DSM 11113 DSM 11113

Thermococcus guaymasensis DSM 11113

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