Name: Thermus antranikianii HN3-7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16730

Type strain:

Species: Thermus antranikianii

Strain Designation: HN3-7

Culture col. no.: DSM 12462, JCM 19900, ATCC 700961, BCRC 17422

Strain history: DSM 12462 <-- M. S. da Costa HN3-7.

NCBI tax ID(s): 1123386 (strain), 88190 (species)

SI-ID 46418

ATCC 700961, DSM 12462, BCRC 17422, CCRC 17422

Other strains from Thermus antranikianii

T. antranikianii HN2-7, DSM 12461

Section

Thermus antranikianii HN3-7 is a thermophilic bacterium that was isolated from hot spring.

thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Thermales*
	Family	*Thermaceae*
	Genus	*Thermus*
	Species	**Thermus antranikianii**
	Full Scientific Name (LPSN)	Thermus antranikianii Chung et al. 2000

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4730]

Culture medium

THERMUS 162 MEDIUM (DSMZ Medium 878)

[Ref.: #4730]

Culture medium growth

[Ref.: #4730]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4730]

Culture medium composition

expand / minimize

[Ref.: #4730]

Culture medium

MODIFIED THERMUS 162 MEDIUM (DSMZ Medium 630)

[Ref.: #4730]

Culture medium growth

[Ref.: #4730]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4730]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4730]			growth	70 °C
[Ref.: #67770]			growth	70 °C

[Ref.: #4730]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4730]	Sample type/isolated from	hot spring
[Ref.: #4730]	Geographic location (country and/or sea, region)	Hruni
[Ref.: #4730]	Country	Iceland
[Ref.: #4730]	Country ISO 3 Code	ISL
[Ref.: #4730]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Hot springs at Hruni in Iceland
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y18411 (>99% sequence identity) for Thermus antranikianii subclade from Microbeatlas

Aquatic Samples	173
Soil Samples	39
Animal Samples	177
Plant Samples	12
Total Samples	401

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4730]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4730]	Thermus antranikianus 16S rRNA gene, strain HN3-7T	Y18411	1475	ENA	88190 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thermus antranikianii DSM 12462	GCA_000423905	scaffold	GenBank	1123386 tax ID
[Ref.: #66792]	Thermus antranikianii DSM 12462	1123386.3	wgs	PATRIC	1123386 tax ID	*
[Ref.: #66792]	Thermus antranikianii DSM 12462	2522572193	draft	JGI IMG/M	1123386 tax ID	*
[Ref.: #66792]	Thermus antranikianii JCM 19900	GCA_028472205	complete	GenBank	88190 tax ID	*

[Ref.: #67770]

GC-content

65.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermus antranikianii JCM 19900 NCBI: GCA_028472205.1
[Ref.: #69480]	flagellated	no	97.749	no
[Ref.: #69480]	gram-positive	no	95.973	no
[Ref.: #69480]	anaerobic	no	95.949	no
[Ref.: #69480]	aerobic	yes	74.296	no
[Ref.: #69480]	halophile	no	85.035	no
[Ref.: #69480]	spore-forming	no	91.746	no
[Ref.: #69480]	glucose-ferment	no	85.224	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	yes	84.989	no
[Ref.: #69480]	motile	no	87.825	no

Availability in culture collections External links

[Ref.: #4730]

Culture collection no.

DSM 12462, JCM 19900, ATCC 700961, BCRC 17422

[Ref.: #85749]

SI-ID 46418

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Distinct Expression of the Two NO-Forming Nitrite Reductases in Thermus antranikianii DSM 12462(T) Improved Environmental Adaptability.	Liu RR, Tian Y, Zhou EM, Xiong MJ, Xiao M, Li WJ	Microb Ecol	10.1007/s00248-020-01528-3	2020	*
Phylogeny	Thermus amyloliquefaciens sp. nov., isolated from a hot spring sediment sample.	Yu TT, Ming H, Yao JC, Zhou EM, Park DJ, Hozzein WN, Kim CJ, Wadaan MAM, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000289	2015	*
Phylogeny	Isolation and characterization of a mixotrophic sulfur-oxidizing Thermus scotoductus.	Skirnisdottir S, Hreggvidsson GO, Holst O, Kristjansson JK	Extremophiles	10.1007/s007920000172	2001	*
Phylogeny	Thermus igniterrae sp. nov. and Thermus antranikianii sp. nov., two new species from Iceland.	Chung AP, Rainey FA, Valente M, Nobre MF, da Costa MS	Int J Syst Evol Microbiol	10.1099/00207713-50-1-209	2000	*

References

#4730

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12462

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85749

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46418.1 )

* These data were automatically processed and therefore are not curated

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Thermus antranikianii JCM 19900

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