Strain identifier

BacDive ID: 16730

Type strain: Yes

Species: Thermus antranikianii

Strain Designation: HN3-7

Strain history: DSM 12462 <-- M. S. da Costa HN3-7.

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4730

BacDive-ID: 16730

DSM-Number: 12462

keywords: genome sequence, 16S sequence, Bacteria, thermophilic

description: Thermus antranikianii HN3-7 is a thermophilic bacterium that was isolated from hot spring.

NCBI tax id

NCBI tax idMatching level
1123386strain
88190species

strain history

@refhistory
4730<- M. S. da Costa, Univ. Coimbra; HN3-7
67770DSM 12462 <-- M. S. da Costa HN3-7.

doi: 10.13145/bacdive16730.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/deinococcota
  • domain: Bacteria
  • phylum: Deinococcota
  • class: Deinococci
  • order: Thermales
  • family: Thermaceae
  • genus: Thermus
  • species: Thermus antranikianii
  • full scientific name: Thermus antranikianii Chung et al. 2000

@ref: 4730

domain: Bacteria

phylum: Deinococcus-Thermus

class: Deinococci

order: Thermales

family: Thermaceae

genus: Thermus

species: Thermus antranikianii

full scientific name: Thermus antranikianii Chung et al. 2000

strain designation: HN3-7

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4730THERMUS 162 MEDIUM (DSMZ Medium 878)yeshttps://mediadive.dsmz.de/medium/878Name: THERMUS 162 MEDIUM (DSMZ Medium 878) Composition: Agar 28.0 g/l Na2HPO4 x 12 H2O 4.3 g/l Yeast extract 1.0 g/l Tryptone 1.0 g/l KH2PO4 0.544 g/l MgCl2 x 6 H2O 0.2 g/l Nitrilotriacetic acid 0.1 g/l CaSO4 x 2 H2O 0.04 g/l Fe(III) citrate 0.00122472 g/l MnSO4 x H2O 0.00114 g/l ZnSO4 x 7 H2O 0.00025 g/l H3BO3 0.00025 g/l CoCl2 x 6 H2O 2.25e-05 g/l CuSO4 x 5 H2O 1.25e-05 g/l Na2MoO4 x 2 H2O 1.25e-05 g/l H2SO4 Distilled water
4730MODIFIED THERMUS 162 MEDIUM (DSMZ Medium 630)yeshttps://mediadive.dsmz.de/medium/630Name: MODIFIED THERMUS 162 MEDIUM (DSMZ Medium 630) Composition: Agar 28.0 g/l Na2HPO4 x 12 H2O 4.3 g/l Yeast extract 2.5 g/l Tryptone 2.5 g/l KH2PO4 0.544 g/l MgCl2 x 6 H2O 0.2 g/l CaSO4 x 2 H2O 0.04 g/l Nitrilotriacetic acid 0.0064 g/l Fe(III) citrate 0.00122472 g/l FeCl2 x 4 H2O 0.0005 g/l MnCl2 x 4 H2O 0.00025 g/l CoCl2 x 4 H2O 0.00015 g/l CuCl2 x 2 H2O 2.5e-05 g/l Na2MoO4 x 2 H2O 2.5e-05 g/l H3BO3 1e-05 g/l NiCl2 x 6 H2O 1e-05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
4730positivegrowth70thermophilic
67770positivegrowth70thermophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
4730hot springHruniIcelandISLEurope
67770Hot springs at Hruni in Iceland

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_71152.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_87;96_457;97_38408;98_49891;99_71152&stattab=map
  • Last taxonomy: Thermus antranikianii subclade
  • 16S sequence: Y18411
  • Sequence Identity:
  • Total samples: 401
  • soil counts: 39
  • aquatic counts: 173
  • animal counts: 177
  • plant counts: 12

Safety information

risk assessment

  • @ref: 4730
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4730
  • description: Thermus antranikianus 16S rRNA gene, strain HN3-7T
  • accession: Y18411
  • length: 1475
  • database: ena
  • NCBI tax ID: 88190

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thermus antranikianii DSM 124621123386.3wgspatric1123386
66792Thermus antranikianii DSM 124622522572193draftimg1123386
67770Thermus antranikianii DSM 12462GCA_000423905scaffoldncbi1123386
66792Thermus antranikianii JCM 19900GCA_028472205completencbi88190

GC content

  • @ref: 67770
  • GC-content: 65.4
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.749no
gram-positiveno95.973no
anaerobicno95.949no
aerobicyes74.296no
halophileno85.035no
spore-formingno91.746no
glucose-fermentno85.224no
thermophileyes100yes
glucose-utilyes84.989no
motileno87.825no

External links

@ref: 4730

culture collection no.: DSM 12462, JCM 19900, ATCC 700961, BCRC 17422

straininfo link

  • @ref: 85749
  • straininfo: 46418

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10826806Thermus igniterrae sp. nov. and Thermus antranikianii sp. nov., two new species from Iceland.Chung AP, Rainey FA, Valente M, Nobre MF, da Costa MSInt J Syst Evol Microbiol10.1099/00207713-50-1-2092000Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Hydrogen-Ion Concentration, Iceland, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature, Thermus/chemistry/*classification/genetics/growth & development/isolation & purification, *Water MicrobiologyGenetics
Phylogeny11302502Isolation and characterization of a mixotrophic sulfur-oxidizing Thermus scotoductus.Skirnisdottir S, Hreggvidsson GO, Holst O, Kristjansson JKExtremophiles10.1007/s0079200001722001Base Composition, Culture Media, Cytochromes/analysis, DNA, Bacterial/chemistry/genetics, Genes, rRNA, Hot Temperature, Hydrogen-Ion Concentration, Iceland, Oxidation-Reduction, Phenotype, Phylogeny, Sulfates/metabolism, Sulfur/*metabolism, Thermus/classification/growth & development/*isolation & purification/*metabolism, Thiosulfates/*metabolism, *Water MicrobiologyMetabolism
Phylogeny25920724Thermus amyloliquefaciens sp. nov., isolated from a hot spring sediment sample.Yu TT, Ming H, Yao JC, Zhou EM, Park DJ, Hozzein WN, Kim CJ, Wadaan MAM, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.0002892015Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Glycolipids/chemistry, Hot Springs/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thermus/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Enzymology32474659Distinct Expression of the Two NO-Forming Nitrite Reductases in Thermus antranikianii DSM 12462(T) Improved Environmental Adaptability.Liu RR, Tian Y, Zhou EM, Xiong MJ, Xiao M, Li WJMicrob Ecol10.1007/s00248-020-01528-32020Adaptation, Physiological/*genetics, Bacterial Proteins/*genetics/metabolism, Nitric Oxide/*metabolism, Nitrite Reductases/*genetics/metabolism, Thermus/enzymology/*geneticsMetabolism

Reference

@idauthorscataloguedoi/urltitle
4730Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12462)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12462
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85749Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46418.1StrainInfo: A central database for resolving microbial strain identifiers