Strain identifier
BacDive ID: 16730
Type strain:
Species: Thermus antranikianii
Strain Designation: HN3-7
Strain history: DSM 12462 <-- M. S. da Costa HN3-7.
NCBI tax ID(s): 1123386 (strain), 88190 (species)
General
@ref: 4730
BacDive-ID: 16730
DSM-Number: 12462
keywords: genome sequence, 16S sequence, Bacteria, thermophilic
description: Thermus antranikianii HN3-7 is a thermophilic bacterium that was isolated from hot spring.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1123386 | strain |
88190 | species |
strain history
@ref | history |
---|---|
4730 | <- M. S. da Costa, Univ. Coimbra; HN3-7 |
67770 | DSM 12462 <-- M. S. da Costa HN3-7. |
doi: 10.13145/bacdive16730.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Thermales
- family: Thermaceae
- genus: Thermus
- species: Thermus antranikianii
- full scientific name: Thermus antranikianii Chung et al. 2000
@ref: 4730
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Thermales
family: Thermaceae
genus: Thermus
species: Thermus antranikianii
full scientific name: Thermus antranikianii Chung et al. 2000
strain designation: HN3-7
type strain: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4730 | THERMUS 162 MEDIUM (DSMZ Medium 878) | yes | https://mediadive.dsmz.de/medium/878 | Name: THERMUS 162 MEDIUM (DSMZ Medium 878) Composition: Agar 28.0 g/l Na2HPO4 x 12 H2O 4.3 g/l Yeast extract 1.0 g/l Tryptone 1.0 g/l KH2PO4 0.544 g/l MgCl2 x 6 H2O 0.2 g/l Nitrilotriacetic acid 0.1 g/l CaSO4 x 2 H2O 0.04 g/l Fe(III) citrate 0.00122472 g/l MnSO4 x H2O 0.00114 g/l ZnSO4 x 7 H2O 0.00025 g/l H3BO3 0.00025 g/l CoCl2 x 6 H2O 2.25e-05 g/l CuSO4 x 5 H2O 1.25e-05 g/l Na2MoO4 x 2 H2O 1.25e-05 g/l H2SO4 Distilled water |
4730 | MODIFIED THERMUS 162 MEDIUM (DSMZ Medium 630) | yes | https://mediadive.dsmz.de/medium/630 | Name: MODIFIED THERMUS 162 MEDIUM (DSMZ Medium 630) Composition: Agar 28.0 g/l Na2HPO4 x 12 H2O 4.3 g/l Yeast extract 2.5 g/l Tryptone 2.5 g/l KH2PO4 0.544 g/l MgCl2 x 6 H2O 0.2 g/l CaSO4 x 2 H2O 0.04 g/l Nitrilotriacetic acid 0.0064 g/l Fe(III) citrate 0.00122472 g/l FeCl2 x 4 H2O 0.0005 g/l MnCl2 x 4 H2O 0.00025 g/l CoCl2 x 4 H2O 0.00015 g/l CuCl2 x 2 H2O 2.5e-05 g/l Na2MoO4 x 2 H2O 2.5e-05 g/l H3BO3 1e-05 g/l NiCl2 x 6 H2O 1e-05 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
4730 | positive | growth | 70 | thermophilic |
67770 | positive | growth | 70 | thermophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
4730 | hot spring | Hruni | Iceland | ISL | Europe |
67770 | Hot springs at Hruni in Iceland |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Thermal spring |
#Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_71152.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_87;96_457;97_38408;98_49891;99_71152&stattab=map
- Last taxonomy: Thermus antranikianii subclade
- 16S sequence: Y18411
- Sequence Identity:
- Total samples: 401
- soil counts: 39
- aquatic counts: 173
- animal counts: 177
- plant counts: 12
Safety information
risk assessment
- @ref: 4730
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4730
- description: Thermus antranikianus 16S rRNA gene, strain HN3-7T
- accession: Y18411
- length: 1475
- database: ena
- NCBI tax ID: 88190
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Thermus antranikianii DSM 12462 | 1123386.3 | wgs | patric | 1123386 |
66792 | Thermus antranikianii DSM 12462 | 2522572193 | draft | img | 1123386 |
67770 | Thermus antranikianii DSM 12462 | GCA_000423905 | scaffold | ncbi | 1123386 |
66792 | Thermus antranikianii JCM 19900 | GCA_028472205 | complete | ncbi | 88190 |
GC content
- @ref: 67770
- GC-content: 65.4
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 97.749 | no |
gram-positive | no | 95.973 | no |
anaerobic | no | 95.949 | no |
aerobic | yes | 74.296 | no |
halophile | no | 85.035 | no |
spore-forming | no | 91.746 | no |
glucose-ferment | no | 85.224 | no |
thermophile | yes | 100 | yes |
glucose-util | yes | 84.989 | no |
motile | no | 87.825 | no |
External links
@ref: 4730
culture collection no.: DSM 12462, JCM 19900, ATCC 700961, BCRC 17422
straininfo link
- @ref: 85749
- straininfo: 46418
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 10826806 | Thermus igniterrae sp. nov. and Thermus antranikianii sp. nov., two new species from Iceland. | Chung AP, Rainey FA, Valente M, Nobre MF, da Costa MS | Int J Syst Evol Microbiol | 10.1099/00207713-50-1-209 | 2000 | Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Hydrogen-Ion Concentration, Iceland, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature, Thermus/chemistry/*classification/genetics/growth & development/isolation & purification, *Water Microbiology | Genetics |
Phylogeny | 11302502 | Isolation and characterization of a mixotrophic sulfur-oxidizing Thermus scotoductus. | Skirnisdottir S, Hreggvidsson GO, Holst O, Kristjansson JK | Extremophiles | 10.1007/s007920000172 | 2001 | Base Composition, Culture Media, Cytochromes/analysis, DNA, Bacterial/chemistry/genetics, Genes, rRNA, Hot Temperature, Hydrogen-Ion Concentration, Iceland, Oxidation-Reduction, Phenotype, Phylogeny, Sulfates/metabolism, Sulfur/*metabolism, Thermus/classification/growth & development/*isolation & purification/*metabolism, Thiosulfates/*metabolism, *Water Microbiology | Metabolism |
Phylogeny | 25920724 | Thermus amyloliquefaciens sp. nov., isolated from a hot spring sediment sample. | Yu TT, Ming H, Yao JC, Zhou EM, Park DJ, Hozzein WN, Kim CJ, Wadaan MAM, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.000289 | 2015 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Glycolipids/chemistry, Hot Springs/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thermus/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Enzymology | 32474659 | Distinct Expression of the Two NO-Forming Nitrite Reductases in Thermus antranikianii DSM 12462(T) Improved Environmental Adaptability. | Liu RR, Tian Y, Zhou EM, Xiong MJ, Xiao M, Li WJ | Microb Ecol | 10.1007/s00248-020-01528-3 | 2020 | Adaptation, Physiological/*genetics, Bacterial Proteins/*genetics/metabolism, Nitric Oxide/*metabolism, Nitrite Reductases/*genetics/metabolism, Thermus/enzymology/*genetics | Metabolism |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
4730 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12462) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12462 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
85749 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46418.1 | StrainInfo: A central database for resolving microbial strain identifiers |