Name: Sulfuracidifex metallicus DSM 6482
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16655

Type strain:

Species: Sulfuracidifex metallicus

Culture col. no.: DSM 6482, Kra 23, JCM 9184, NBRC 15436, IFO 15436

Strain history: DSM 6482 <-- K. O. Stetter and G. Huber Kra23.

NCBI tax ID(s): 47303 (species)

SI-ID 48214

DSM 6482, JCM 9184, IFO 15436, NBRC 15436

Special Collections

DSMZ
JCM

Section

Sulfuracidifex metallicus DSM 6482 is an archaeon that was isolated from solfataric field.

16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Sulfolobales*
	Family	*Sulfolobaceae*
	Genus	*Sulfuracidifex*
	Species	**Sulfuracidifex metallicus**
	Full Scientific Name (LPSN)	Sulfuracidifex metallicus (Huber and Stetter 1992) Itoh et al. 2020

Synonym

Sulfolobus metallicus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2693]

Culture medium

SULFOLOBUS MEDIUM (DSMZ Medium 88)

[Ref.: #2693]

Culture medium growth

[Ref.: #2693]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2693]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2693]			growth	65 °C
[Ref.: #67770]			growth	65 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2693]	Sample type/isolated from	solfataric field
[Ref.: #2693]	Geographic location (country and/or sea, region)	Krafla area
[Ref.: #2693]	Country	Iceland
[Ref.: #2693]	Country ISO 3 Code	ISL
[Ref.: #2693]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Solfatara in Krafla
[Ref.: #67770]	Country	Iceland
[Ref.: #67770]	Country ISO 3 Code	ISL
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Volcanic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2693]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2693]	S.metallicus DNA for 16S ribosomal RNA gene	X90479	1395	GenBank ENA	523847 tax ID
[Ref.: #20218]	Sulfuracidifex metallicus 16S rRNA gene, almost full-length sequence	D85519	1433	GenBank ENA	523847 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sulfuracidifex metallicus DSM 6482 = JCM 9184	GCA_001316045	contig	GenBank ENA	523847 tax ID
[Ref.: #67770]	Sulfuracidifex metallicus DSM 6482 = JCM 9184	GCA_009729515	contig	GenBank ENA	523847 tax ID
[Ref.: #66792]	Sulfolobus metallicus DSM 6482, JCM 9184	2681813032	draft	JGI IMG/M	523847 tax ID	*
[Ref.: #66792]	Sulfolobus metallicus DSM 6482 = JCM 9184	523847.5	wgs	PATRIC	523847 tax ID	*

[Ref.: #2693]	GC-content	38.0 mol%
[Ref.: #67770]	GC-content	37 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	38 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #2693]

Culture collection no.

DSM 6482, Kra 23, JCM 9184, NBRC 15436, IFO 15436

[Ref.: #85676]

SI-ID 48214

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Use of lectins to in situ visualize glycoconjugates of extracellular polymeric substances in acidophilic archaeal biofilms.	Zhang RY, Neu TR, Bellenberg S, Kuhlicke U, Sand W, Vera M	Microb Biotechnol	10.1111/1751-7915.12188	2014	*
Phylogeny	Sulfuracidifex tepidarius gen. nov., sp. nov. and transfer of Sulfolobus metallicus Huber and Stetter 1992 to the genus Sulfuracidifex as Sulfuracidifex metallicus comb. nov.	Itoh T, Miura T, Sakai HD, Kato S, Ohkuma M, Takashina T	Int J Syst Evol Microbiol	10.1099/ijsem.0.003981	2020	*
Metabolism	Biofilm formation and interspecies interactions in mixed cultures of thermo-acidophilic archaea Acidianus spp. and Sulfolobus metallicus.	Castro C, Zhang R, Liu J, Bellenberg S, Neu TR, Donati E, Sand W, Vera M	Res Microbiol	10.1016/j.resmic.2016.06.005	2016	*
Metabolism	Visualization and analysis of EPS glycoconjugates of the thermoacidophilic archaeon Sulfolobus metallicus.	Zhang R, Neu TR, Zhang Y, Bellenberg S, Kuhlicke U, Li Q, Sand W, Vera M	Appl Microbiol Biotechnol	10.1007/s00253-015-6775-y	2015	*

References

#2693

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6482

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#85676

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48214.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Sulfuracidifex metallicus in external resources:
SILVA
BRENDA
PANGAEA
GBIF