Strain identifier
BacDive ID: 16655
Type strain:
Species: Sulfuracidifex metallicus
Strain history: DSM 6482 <-- K. O. Stetter and G. Huber Kra23.
NCBI tax ID(s): 47303 (species)
General
@ref: 2693
BacDive-ID: 16655
DSM-Number: 6482
keywords: genome sequence, 16S sequence, Archaea, thermophilic
description: Sulfuracidifex metallicus DSM 6482 is a thermophilic archaeon that was isolated from solfataric field.
NCBI tax id
- NCBI tax id: 47303
- Matching level: species
strain history
@ref | history |
---|---|
2693 | <- K. O. Stetter, Univ. Regensburg, Germany; Kra 23 <- G. Huber and K. O. Stetter {1985} |
67770 | DSM 6482 <-- K. O. Stetter and G. Huber Kra23. |
doi: 10.13145/bacdive16655.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/thermoproteota
- domain: Archaea
- phylum: Thermoproteota
- class: Thermoprotei
- order: Sulfolobales
- family: Sulfolobaceae
- genus: Sulfuracidifex
- species: Sulfuracidifex metallicus
- full scientific name: Sulfuracidifex metallicus (Huber and Stetter 1992) Itoh et al. 2020
synonyms
- @ref: 20215
- synonym: Sulfolobus metallicus
@ref: 2693
domain: Archaea
phylum: Crenarchaeota
class: Thermoprotei
order: Sulfolobales
family: Sulfolobaceae
genus: Sulfuracidifex
species: Sulfuracidifex metallicus
full scientific name: Sulfuracidifex metallicus (Huber and Stetter 1992) Itoh et al. 2020
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2693
- name: SULFOLOBUS MEDIUM (DSMZ Medium 88)
- growth: yes
- link: https://mediadive.dsmz.de/medium/88
- composition: Name: SULFOLOBUS MEDIUM (DSMZ Medium 88; with strain-specific modifications) Composition: Sulfur powder 4.9505 g/l (NH4)2SO4 1.28713 g/l KH2PO4 0.277228 g/l MgSO4 x 7 H2O 0.247525 g/l Yeast extract 0.19802 g/l CaCl2 x 2 H2O 0.0693069 g/l FeCl3 x 6 H2O 0.019802 g/l Na2B4O7 x 10 H2O 0.00445545 g/l MnCl2 x 4 H2O 0.00178218 g/l ZnSO4 x 7 H2O 0.000217822 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Na2MoO4 x 2 H2O 2.9703e-05 g/l VOSO4 x 2 H2O 2.9703e-05 g/l CoSO4 x 7 H2O 9.90099e-06 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2693 | positive | growth | 65 | thermophilic |
67770 | positive | growth | 65 | thermophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
2693 | solfataric field | Krafla area | Iceland | ISL | Europe |
67770 | Solfatara in Krafla | Iceland | ISL | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Volcanic
Safety information
risk assessment
- @ref: 2693
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Sulfolobus metallicus 16S rRNA gene, almost full-length sequence | D85519 | 1433 | ena | 523847 |
2693 | S.metallicus DNA for 16S ribosomal RNA gene | X90479 | 1395 | ena | 523847 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Sulfolobus metallicus DSM 6482, JCM 9184 | 2681813032 | draft | img | 523847 |
67770 | Sulfuracidifex metallicus DSM 6482 = JCM 9184 | GCA_001316045 | contig | ncbi | 523847 |
67770 | Sulfuracidifex metallicus DSM 6482 = JCM 9184 | GCA_009729515 | contig | ncbi | 523847 |
66792 | Sulfolobus metallicus DSM 6482 = JCM 9184 | 523847.5 | wgs | patric | 523847 |
GC content
@ref | GC-content | method |
---|---|---|
2693 | 38.0 | |
67770 | 37 | high performance liquid chromatography (HPLC) |
67770 | 38 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 2693
culture collection no.: DSM 6482, Kra 23, JCM 9184, NBRC 15436, IFO 15436
straininfo link
- @ref: 85676
- straininfo: 48214
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 25488256 | Use of lectins to in situ visualize glycoconjugates of extracellular polymeric substances in acidophilic archaeal biofilms. | Zhang RY, Neu TR, Bellenberg S, Kuhlicke U, Sand W, Vera M | Microb Biotechnol | 10.1111/1751-7915.12188 | 2014 | Archaea/growth & development/*metabolism/*physiology, Biofilms/*growth & development, Biopolymers/*analysis, Glycoconjugates/*analysis, Iron/metabolism, Lectins/*metabolism, Microscopy, Fluorescence, Protein Binding, Sulfides/metabolism | |
Metabolism | 26169631 | Visualization and analysis of EPS glycoconjugates of the thermoacidophilic archaeon Sulfolobus metallicus. | Zhang R, Neu TR, Zhang Y, Bellenberg S, Kuhlicke U, Li Q, Sand W, Vera M | Appl Microbiol Biotechnol | 10.1007/s00253-015-6775-y | 2015 | Biofilms/growth & development, Biopolymers/*analysis, Carbohydrates/analysis, Glycoconjugates/*analysis, Lectins/metabolism, Microscopy, Confocal, Protein Binding, Proteins/analysis, Staining and Labeling, Sulfolobus/*chemistry/growth & development/physiology, Sulfur | |
Metabolism | 27388200 | Biofilm formation and interspecies interactions in mixed cultures of thermo-acidophilic archaea Acidianus spp. and Sulfolobus metallicus. | Castro C, Zhang R, Liu J, Bellenberg S, Neu TR, Donati E, Sand W, Vera M | Res Microbiol | 10.1016/j.resmic.2016.06.005 | 2016 | Acidianus/*physiology, Bacterial Adhesion, Biofilms/*growth & development, *Environmental Microbiology, Iron/metabolism, *Microbial Interactions, Microscopy, Confocal, Sulfides/metabolism, Sulfolobus/*physiology, Sulfur/metabolism | |
Phylogeny | 31958046 | Sulfuracidifex tepidarius gen. nov., sp. nov. and transfer of Sulfolobus metallicus Huber and Stetter 1992 to the genus Sulfuracidifex as Sulfuracidifex metallicus comb. nov. | Itoh T, Miura T, Sakai HD, Kato S, Ohkuma M, Takashina T | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003981 | 2020 | Autotrophic Processes, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Japan, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Sulfolobaceae/*classification/isolation & purification, Sulfolobus/*classification | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2693 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6482) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6482 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
85676 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48214.1 | StrainInfo: A central database for resolving microbial strain identifiers |