Name: Acidianus ambivalens DSM 3772
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16643

Type strain:

Species: Acidianus ambivalens

Culture col. no.: DSM 3772, JCM 9191, LEI 10

Strain history: DSM 3772 <-- W. Zillig Lei 10.

NCBI tax ID(s): 2283 (species)

SI-ID 47758

DSM 3772, JCM 9191, CIP 104912

Special Collections

DSMZ
JCM

Section

When using BacDive for research please cite our paper

Acidianus ambivalens DSM 3772 is an anaerobe, hyperthermophilic archaeon that was isolated from solfataric mud.

anaerobe
hyperthermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Sulfolobales*
	Family	*Sulfolobaceae*
	Genus	*Acidianus*
	Species	**Acidianus ambivalens**
	Full Scientific Name (LPSN)	Acidianus ambivalens (Zillig and Böck 1987) Fuchs et al. 1996

Synonym

Desulfurolobus ambivalens

Information on morphological and physiological properties Morphology

[Ref.: #1468]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1468]

Culture medium

ACIDIANUS MEDIUM (ANAEROBIC) (DSMZ Medium 358a)

[Ref.: #1468]

Culture medium growth

[Ref.: #1468]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1468]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1468]			growth	80 °C
[Ref.: #67770]			growth	80 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1468]	Oxygen tolerance	anaerobe
[Ref.: #125439]	Oxygen tolerance	anaerobe Confidence in %92.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1468]	Sample type/isolated from	solfataric mud
[Ref.: #1468]	Geographic location (country and/or sea, region)	Leihnukur fissure
[Ref.: #1468]	Country	Iceland
[Ref.: #1468]	Country ISO 3 Code	ISL
[Ref.: #1468]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Solfataric waterhole at Leirhukur fissure
[Ref.: #67770]	Country	Iceland
[Ref.: #67770]	Country ISO 3 Code	ISL
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Volcanic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1468]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1468]	Acidianus ambivalens 16S rRNA gene, almost full-length sequence	D85506	1462	GenBank ENA	2283 tax ID
[Ref.: #20218]	D.ambivalens DNA for 16S ribosomal RNA gene	X90484	1422	GenBank ENA	2283 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Acidianus ambivalens LEI 10	GCA_009729015	complete	GenBank ENA	2283 tax ID
[Ref.: #67770]	Acidianus ambivalens DSM 3772	GCA_009428885	contig	GenBank ENA	2283 tax ID

[Ref.: #1468]

GC-content

32.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acidianus ambivalens DSM 3772 NCBI: GCA_009428885
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	64.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	66.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	83.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	92.4

Availability in culture collections External links

[Ref.: #1468]

Culture collection no.

DSM 3772, JCM 9191, LEI 10

[Ref.: #85664]

SI-ID 47758

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Acidianus ambivalens DSM 3772, an Aerobic Thermoacidophilic Sulfur Disproportionator.	Bertran E, Ward LM, Johnston DT	Microbiol Resour Announc	10.1128/MRA.01415-19	2020	*
Enzymology	Functional characterization of an extremely thermophilic ATPase in membranes of the crenarchaeon Acidianus ambivalens.	Hinrichs M, Schafer G, Anemuller S	Biol Chem	10.1515/BC.1999.132	1999	*
Enzymology	The terminal quinol oxidase of the hyperthermophilic archaeon Acidianus ambivalens exhibits a novel subunit structure and gene organization.	Purschke WG, Schmidt CL, Petersen A, Schafer G	J Bacteriol	10.1128/jb.179.4.1344-1353.1997	1997	*
Genetics	A seven-iron ferredoxin from the thermoacidophilic archaeon Desulfurolobus ambivalens.	Teixeira M, Batista R, Campos AP, Gomes C, Mendes J, Pacheco I, Anemuller S, Hagen WR	Eur J Biochem	10.1111/j.1432-1033.1995.tb20392.x	1995	*
Enzymology	Coupled enzymatic production of sulfite, thiosulfate, and hydrogen sulfide from sulfur: purification and properties of a sulfur oxygenase reductase from the facultatively anaerobic archaebacterium Desulfurolobus ambivalens.	Kletzin A	J Bacteriol	10.1128/jb.171.3.1638-1643.1989	1989	*

References

#1468

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3772

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#85664

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47758.1 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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