Strain identifier
BacDive ID: 16643
Type strain:
Species: Acidianus ambivalens
Strain history: DSM 3772 <-- W. Zillig Lei 10.
NCBI tax ID(s): 2283 (species)
version 8.1 (current version)
General
@ref: 1468
BacDive-ID: 16643
DSM-Number: 3772
keywords: genome sequence, 16S sequence, Archaea, anaerobe, hyperthermophilic
description: Acidianus ambivalens DSM 3772 is an anaerobe, hyperthermophilic archaeon that was isolated from solfataric mud.
NCBI tax id
- NCBI tax id: 2283
- Matching level: species
strain history
@ref | history |
---|---|
1468 | <- W. Zillig, Max Planck Inst. Biochem., Martinsried, Germany; LEI 10 <- W. Zillig {1984} |
67770 | DSM 3772 <-- W. Zillig Lei 10. |
doi: 10.13145/bacdive16643.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/thermoproteota
- domain: Archaea
- phylum: Thermoproteota
- class: Thermoprotei
- order: Sulfolobales
- family: Sulfolobaceae
- genus: Acidianus
- species: Acidianus ambivalens
- full scientific name: Acidianus ambivalens (Zillig and Böck 1987) Fuchs et al. 1996
synonyms
- @ref: 20215
- synonym: Desulfurolobus ambivalens
@ref: 1468
domain: Archaea
phylum: Crenarchaeota
class: Thermoprotei
order: Sulfolobales
family: Sulfolobaceae
genus: Acidianus
species: Acidianus ambivalens
full scientific name: Acidianus ambivalens (Zillig and Böck 1987) Fuchs et al. 1996
type strain: yes
Morphology
colony morphology
- @ref: 1468
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 1468
- name: ACIDIANUS MEDIUM (ANAEROBIC) (DSMZ Medium 358a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/358a
- composition: Name: ACIDIANUS MEDIUM (ANAEROBIC) (DSMZ Medium 358a; with strain-specific modifications) Composition: Sulfur 4.9505 g/l (NH4)2SO4 1.28713 g/l KH2PO4 0.277228 g/l MgSO4 x 7 H2O 0.247525 g/l CaCl2 x 2 H2O 0.0693069 g/l Yeast extract 0.019802 g/l FeCl3 x 6 H2O 0.019802 g/l Na2B4O7 x 10 H2O 0.00445545 g/l MnCl2 x 4 H2O 0.00178218 g/l ZnSO4 x 7 H2O 0.000217822 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Na2MoO4 x 2 H2O 2.9703e-05 g/l VOSO4 x 2 H2O 2.9703e-05 g/l CoSO4 x 7 H2O 9.90099e-06 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
1468 | positive | growth | 80 | hyperthermophilic |
67770 | positive | growth | 80 | hyperthermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 1468
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
1468 | solfataric mud | Leihnukur fissure | Iceland | ISL | Europe |
67770 | Solfataric waterhole at Leirhukur fissure | Iceland | ISL | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Mud (Sludge) |
#Environmental | #Terrestrial | #Volcanic |
Safety information
risk assessment
- @ref: 1468
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | D.ambivalens DNA for 16S ribosomal RNA gene | X90484 | 1422 | ena | 2283 |
1468 | Acidianus ambivalens 16S rRNA gene, almost full-length sequence | D85506 | 1462 | ena | 2283 |
67770 | Desulfurolobus ambivalens 16S rRNA gene | D38774 | 860 | ena | 2283 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
67770 | Acidianus ambivalens LEI 10 | GCA_009729015 | complete | ncbi | 2283 |
67770 | Acidianus ambivalens DSM 3772 | GCA_009428885 | contig | ncbi | 2283 |
GC content
- @ref: 1468
- GC-content: 32.7
External links
@ref: 1468
culture collection no.: DSM 3772, JCM 9191, LEI 10
straininfo link
- @ref: 85664
- straininfo: 47758
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 2493451 | Coupled enzymatic production of sulfite, thiosulfate, and hydrogen sulfide from sulfur: purification and properties of a sulfur oxygenase reductase from the facultatively anaerobic archaebacterium Desulfurolobus ambivalens. | Kletzin A | J Bacteriol | 10.1128/jb.171.3.1638-1643.1989 | 1989 | Archaea/*enzymology, *Archaeal Proteins, Bacteria/*enzymology, Bacteria, Anaerobic/enzymology, Hydrogen Sulfide/analysis, Kinetics, Oxidoreductases/*isolation & purification/metabolism, Oxidoreductases Acting on Sulfur Group Donors, Sulfites/analysis, Thermodynamics, Thiosulfates/analysis | Biotechnology |
Genetics | 7851403 | A seven-iron ferredoxin from the thermoacidophilic archaeon Desulfurolobus ambivalens. | Teixeira M, Batista R, Campos AP, Gomes C, Mendes J, Pacheco I, Anemuller S, Hagen WR | Eur J Biochem | 10.1111/j.1432-1033.1995.tb20392.x | 1995 | Amino Acid Sequence, Amino Acids/analysis, Archaea/*chemistry, Electron Spin Resonance Spectroscopy, Ferredoxins/*chemistry/isolation & purification/physiology, Iron/*analysis, Molecular Sequence Data, Sequence Homology, Amino Acid, Spectrophotometry, Ultraviolet | Enzymology |
Enzymology | 9023221 | The terminal quinol oxidase of the hyperthermophilic archaeon Acidianus ambivalens exhibits a novel subunit structure and gene organization. | Purschke WG, Schmidt CL, Petersen A, Schafer G | J Bacteriol | 10.1128/jb.179.4.1344-1353.1997 | 1997 | Amino Acid Sequence, Chromosome Mapping, Cloning, Molecular, *Genes, Bacterial, Molecular Sequence Data, Multigene Family, Open Reading Frames, *Operon, Oxidation-Reduction, Oxidoreductases/*chemistry/*genetics/isolation & purification/metabolism, Phylogeny, Point Mutation, Protein Conformation, Protein Structure, Secondary, RNA, Bacterial/genetics, RNA, Messenger/genetics, Sequence Alignment, Sulfolobaceae/*enzymology/genetics, Thiophenes/metabolism, Transcription, Genetic | Phylogeny |
Enzymology | 10543443 | Functional characterization of an extremely thermophilic ATPase in membranes of the crenarchaeon Acidianus ambivalens. | Hinrichs M, Schafer G, Anemuller S | Biol Chem | 10.1515/BC.1999.132 | 1999 | Adenosine Triphosphatases/*metabolism, Archaea/*enzymology, Catalysis, Cations, Divalent, Cell Membrane/enzymology, Hydrogen-Ion Concentration, Hydrolysis, Kinetics, Substrate Specificity | Metabolism |
Genetics | 31948968 | Draft Genome Sequence of Acidianus ambivalens DSM 3772, an Aerobic Thermoacidophilic Sulfur Disproportionator. | Bertran E, Ward LM, Johnston DT | Microbiol Resour Announc | 10.1128/MRA.01415-19 | 2020 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
1468 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3772) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3772 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
85664 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47758.1 | StrainInfo: A central database for resolving microbial strain identifiers |