Name: Sulfurisphaera ohwakuensis TA-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16639

Type strain:

Species: Sulfurisphaera ohwakuensis

Strain Designation: TA-1

Culture col. no.: DSM 12421, IFO 15161, JCM 9065, NBRC 15161

Strain history: IFO 15161 <-- T. Itoh TA-1.

NCBI tax ID(s): 69656 (species)

SI-ID 49285

DSM 12421, IFO 15161, JCM 9065, NBRC 15161

Special Collections

DSMZ
JCM

Section

Sulfurisphaera ohwakuensis TA-1 is a spore-forming, Gram-negative archaeon that was isolated from hot spring.

Gram-negative
spore-forming
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Sulfolobales*
	Family	*Sulfolobaceae*
	Genus	*Sulfurisphaera*
	Species	**Sulfurisphaera ohwakuensis**
	Full Scientific Name (LPSN)	Sulfurisphaera ohwakuensis Kurosawa et al. 1998

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4552]

Culture medium

SULFOLOBUS MEDIUM (DSMZ Medium 88)

[Ref.: #4552]

Culture medium growth

[Ref.: #4552]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4552]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4552]			growth	75 °C
[Ref.: #67770]			growth	75 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4552]	Sample type/isolated from	hot spring
[Ref.: #4552]	Geographic location (country and/or sea, region)	Ohwaku Valley, Hakone
[Ref.: #4552]	Country	Japan
[Ref.: #4552]	Country ISO 3 Code	JPN
[Ref.: #4552]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Acidic hot mud
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hakone
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D85507 (>99% sequence identity) for Sulfurisphaera from Microbeatlas

Aquatic Samples	24
Soil Samples
Animal Samples	1
Plant Samples
Total Samples	25

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4552]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4552]	Sulfurisphaera ohwakuensis 16S rRNA gene, complete sequence	D85507	2213	GenBank ENA	69656 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sulfurisphaera ohwakuensis TA-1	GCA_009729055	complete	GenBank ENA	69656 tax ID	*
[Ref.: #66792]	Sulfurisphaera ohwakuensis DSM 12421	GCA_014202105	contig	GenBank ENA	69656 tax ID	*
[Ref.: #66792]	Sulfurisphaera ohwakuensis DSM 12421	2861352127	draft	JGI IMG/M	69656 tax ID	*

[Ref.: #4552]	GC-content	33 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	32.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sulfurisphaera ohwakuensis TA-1 NCBI: GCA_009729055.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sulfurisphaera ohwakuensis TA-1 NCBI: GCA_009729055.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	73.619	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	70.801	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	69.366	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.489	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	81.911	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.875	no

Availability in culture collections External links

[Ref.: #4552]

Culture collection no.

DSM 12421, IFO 15161, JCM 9065, NBRC 15161

[Ref.: #85660]

SI-ID 49285

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfurisphaera javensis sp. nov., a hyperthermophilic and acidophilic archaeon isolated from Indonesian hot spring, and reclassification of Sulfolobus tokodaii Suzuki et al. 2002 as Sulfurisphaera tokodaii comb. nov.	Tsuboi K, Sakai HD, Nur N, Stedman KM, Kurosawa N, Suwanto A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002765	2018	*
Phylogeny	Sulfurisphaera ohwakuensis gen. nov., sp. nov., a novel extremely thermophilic acidophile of the order Sulfolobales.	Kurosawa N, Itoh YH, Iwai T, Sugai A, Uda I, Kimura N, Horiuchi T, Itoh T	Int J Syst Bacteriol	10.1099/00207713-48-2-451	1998	*

References

#4552

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12421

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85660

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49285.1 )

* These data were automatically processed and therefore are not curated

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