Name: Sphaerisporangium siamense SR14.14
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16629

Type strain:

Species: Sphaerisporangium siamense

Strain Designation: SR14.14

Culture col. no.: DSM 45784, BCC 41491, NBRC 107570, NRRL B-24805

Strain history: <- J. Nakagawa, NBRC; NBRC 107570 <- BCC; BCC 41491 <- K. Duangmal; SR14.14

NCBI tax ID(s): 795645 (species)

SI-ID 397286

DSM 45784

Special Collections

DSMZ

Section

Sphaerisporangium siamense SR14.14 is a spore-forming bacterium that was isolated from rhizospheric soil of rubber tree.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Sphaerisporangium*
	Species	**Sphaerisporangium siamense**
	Full Scientific Name (LPSN)	Sphaerisporangium siamense Duangmal et al. 2012

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 84 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #18200]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18200]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %91.144

[Ref.: #69480]	Ability of spore formation	yes Confidence in %90.408
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18200]	Sample type/isolated from	rhizospheric soil of rubber tree
[Ref.: #18200]	Geographic location (country and/or sea, region)	Nakhon Sawan
[Ref.: #18200]	Country	Thailand
[Ref.: #18200]	Country ISO 3 Code	THA
[Ref.: #18200]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18200]	Sphaerisporangium siamense strain SR14.14 16S ribosomal RNA gene, partial sequence	HM043727	1419	GenBank ENA	795645 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphaerisporangium siamense NBRC 107570	GCA_016863415	contig	GenBank ENA	795645 tax ID	*
[Ref.: #66792]	Sphaerisporangium siamense DSM 45784	GCA_014205275	contig	GenBank ENA	795645 tax ID	*
[Ref.: #66792]	Sphaerisporangium siamense strain DSM 45784	795645.3	wgs	PATRIC	795645 tax ID	*
[Ref.: #66792]	Sphaerisporangium siamense strain NBRC 107570	795645.4	wgs	PATRIC	795645 tax ID	*
[Ref.: #66792]	Sphaerisporangium siamense DSM 45784	2873314349	draft	JGI IMG/M	795645 tax ID	*

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GC-content

71.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphaerisporangium siamense strain NBRC 107570 PATRIC: 795645.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphaerisporangium siamense strain DSM 45784 PATRIC: 795645.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.982	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.897	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.144	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	90.408	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.4	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.5	no

Availability in culture collections External links

[Ref.: #18200]

Culture collection no.

DSM 45784, BCC 41491, NBRC 107570, NRRL B-24805

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SI-ID 397286

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphaerisporangium siamense sp. nov., an actinomycete isolated from rubber-tree rhizospheric soil.	Duangmal K, Mingma R, Pathom-Aree W, Inahashi Y, Matsumoto A, Thamchaipenet A, Takahashi Y	J Antibiot (Tokyo)	10.1038/ja.2011.17	2011	*
Phylogeny	Sphaerisporangium fuscum sp. nov., Isolated from Sediment of Anmucuo Lake in Tibet Autonomous Region of China.	Guo Y, Li J, Li L, Liu C	Curr Microbiol	10.1007/s00284-022-03067-1	2022	*

References

#18200

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45784

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85650

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397286.1 )

* These data were automatically processed and therefore are not curated

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Sphaerisporangium siamense strain NBRC 107570

Sphaerisporangium siamense strain DSM 45784

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