Sphaerisporangium siamense (DSM 45784, BCC 41491, NBRC 107570)

Name: Sphaerisporangium siamense (DSM 45784, BCC 41491, NBRC 107570)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16629

Type strain

Strain Designation SR14.14

Culture col. no. DSM 45784 BCC 41491 NBRC 107570 NRRL B-24805 SR14.14

NCBI tax ID(s) 795645

Special Collections DSMZ

History <- J. Nakagawa, NBRC; NBRC 107570 <- BCC; BCC 41491 <- K. Duangmal; SR14.14

Links

Sphaerisporangium siamense SR14.14 is a bacterium that was isolated from rhizospheric soil of rubber tree.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397286

NBRC 107570,DSM 45784

@ref 20215

Last LPSN update 2026-02-09 11:22:01

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Sphaerisporangium

Species Sphaerisporangium siamense

Full scientific name Sphaerisporangium siamense Duangmal et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.9
125439		90.8

Multimedia

@ref:	18200
multimedia content:	DSM_45784.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45784.jpg
caption:	Medium 84 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
18200	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
18200	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water
18200	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18200	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.144
125439	obligate aerobe	95.7

Spore formation

@ref	Spore formation	Confidence
125438		90.408

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
18200	rhizospheric soil of rubber tree	Nakhon Sawan	Thailand	THA	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18200	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1420527v1 assembly for Sphaerisporangium siamense DSM 45784	contig	GCA_014205275	795645.3	2873314349	795645	70.37
66792	ASM1686341v1 assembly for Sphaerisporangium siamense NBRC 107570	contig	GCA_016863415	795645.4	8065773246	795645	52.92

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18200	Sphaerisporangium siamense strain SR14.14 16S ribosomal RNA gene, partial sequence	HM043727	1419		795645

GC content

18200

GC-content (mol%)71.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sphaerisporangium siamense NBRC 107570
NCBI: GCA_016863415

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	87.80	no
125439	motility	BacteriaNetⓘ	no	90.80	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphaerisporangium siamense strain DSM 45784
PATRIC: 795645.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.98	no
125438	anaerobic	anaerobicⓘ	no	94.90	no
125438	aerobic	aerobicⓘ	yes	91.14	no
125438	spore-forming	spore-formingⓘ	yes	90.41	no
125438	thermophilic	thermophileⓘ	no	95.40	yes
125438	flagellated	motile2+ⓘ	no	85.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphaerisporangium siamense sp. nov., an actinomycete isolated from rubber-tree rhizospheric soil.	Duangmal K, Mingma R, Pathom-Aree W, Inahashi Y, Matsumoto A, Thamchaipenet A, Takahashi Y	J Antibiot (Tokyo)	10.1038/ja.2011.17	2011
Phylogeny	Sphaerisporangium fuscum sp. nov., Isolated from Sediment of Anmucuo Lake in Tibet Autonomous Region of China.	Guo Y, Li J, Li L, Liu C	Curr Microbiol	10.1007/s00284-022-03067-1	2022

References

#18200	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45784
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphaerisporangium siamense (DSM 45784, BCC 41491, NBRC 107570)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014205275

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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