Name: Sphaerisporangium krabiense A-T 0308
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16628

Type strain:

Species: Sphaerisporangium krabiense

Strain Designation: A-T 0308

Culture col. no.: DSM 45790, BCC 21702, NBRC 107571

Strain history: <- C Suriyachadkun, BCC; BCC 21702

NCBI tax ID(s): 763782 (species)

SI-ID 398851

DSM 45790

Special Collections

DSMZ

Section

Sphaerisporangium krabiense A-T 0308 is a spore-forming bacterium that was isolated from soil of tropical mangrove forest.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Sphaerisporangium*
	Species	**Sphaerisporangium krabiense**
	Full Scientific Name (LPSN)	Sphaerisporangium krabiense Suriyachadkun et al. 2011

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

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Caption:

Medium 65 28°C

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

YEAST STARCH AGAR (A) (DSMZ Medium 1027)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #18201]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %91.253

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Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18201]	Sample type/isolated from	soil of tropical mangrove forest
[Ref.: #18201]	Country	Thailand
[Ref.: #18201]	Country ISO 3 Code	THA
[Ref.: #18201]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Climate	#Hot	#Tropical

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM037365 (>99% sequence identity) for Sphaerisporangium krabiense from Microbeatlas

Aquatic Samples
Soil Samples	5
Animal Samples	1
Plant Samples
Total Samples	6

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18201]	Sphaerisporangium krabiense strain A-T 0308 16S ribosomal RNA gene, partial sequence	HM037365	1436	GenBank ENA	763782 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphaerisporangium krabiense NBRC 107571	GCA_016863355	contig	GenBank ENA	763782 tax ID	*
[Ref.: #66792]	Sphaerisporangium krabiense DSM 45790	GCA_014200435	contig	GenBank ENA	763782 tax ID	*
[Ref.: #66792]	Sphaerisporangium krabiense strain DSM 45790	763782.3	wgs	PATRIC	763782 tax ID	*
[Ref.: #66792]	Sphaerisporangium krabiense strain NBRC 107571	763782.4	wgs	PATRIC	763782 tax ID	*
[Ref.: #66792]	Sphaerisporangium krabiense DSM 45790	2844862658	draft	JGI IMG/M	763782 tax ID	*

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GC-content

72 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphaerisporangium krabiense strain NBRC 107571 PATRIC: 763782.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphaerisporangium krabiense strain DSM 45790 PATRIC: 763782.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.499	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.371	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.253	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.141	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.4	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.5	no

Availability in culture collections External links

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Culture collection no.

DSM 45790, BCC 21702, NBRC 107571

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SI-ID 398851

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphaerisporangium krabiense sp. nov., isolated from soil.	Suriyachadkun C, Chunhametha S, Ngaemthao W, Tamura T, Kirtikara K, Sanglier JJ, Kitpreechavanich V	Int J Syst Evol Microbiol	10.1099/ijs.0.027151-0	2011	*

References

#18201

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45790

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85649

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398851.1 )

* These data were automatically processed and therefore are not curated

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Sphaerisporangium krabiense strain NBRC 107571

Sphaerisporangium krabiense strain DSM 45790

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