Strain identifier
BacDive ID: 16628
Type strain: 
Species: Sphaerisporangium krabiense
Strain Designation: A-T 0308
Strain history: <- C Suriyachadkun, BCC; BCC 21702
NCBI tax ID(s): 763782 (species)
version 9.1 (current version)
General
@ref: 18201
BacDive-ID: 16628
DSM-Number: 45790
keywords: genome sequence, 16S sequence, Bacteria, spore-forming
description: Sphaerisporangium krabiense A-T 0308 is a spore-forming bacterium that was isolated from soil of tropical mangrove forest.
NCBI tax id
- NCBI tax id: 763782
- Matching level: species
strain history
- @ref: 18201
- history: <- C Suriyachadkun, BCC; BCC 21702
doi: 10.13145/bacdive16628.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Streptosporangiaceae
- genus: Sphaerisporangium
- species: Sphaerisporangium krabiense
- full scientific name: Sphaerisporangium krabiense Suriyachadkun et al. 2011
@ref: 18201
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptosporangiaceae
genus: Sphaerisporangium
species: Sphaerisporangium krabiense
full scientific name: Sphaerisporangium krabiense Suriyachadkun et al. 2011
strain designation: A-T 0308
type strain: yes
Morphology
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 18201 | https://www.dsmz.de/microorganisms/photos/DSM_45790.jpg | Medium 65 28°C | © Leibniz-Institut DSMZ |
| 18201 | https://www.dsmz.de/microorganisms/photos/DSM_45790.jpg | Medium 65 28°C | Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 18201 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 18201 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf | |
| 18201 | YEAST STARCH AGAR (A) (DSMZ Medium 1027) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1027.pdf |
culture temp
- @ref: 18201
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: aerobe
- confidence: 91.253
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 18201
- sample type: soil of tropical mangrove forest
- country: Thailand
- origin.country: THA
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Mangrove |
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
| #Climate | #Hot | #Tropical |
taxonmaps
- @ref: 69479
- File name: preview.99_170144.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_8333;97_10032;98_33512;99_170144&stattab=map
- Last taxonomy: Sphaerisporangium krabiense
- 16S sequence: HM037365
- Sequence Identity:
- Total samples: 6
- soil counts: 5
- animal counts: 1
Safety information
risk assessment
- @ref: 18201
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18201
- description: Sphaerisporangium krabiense strain A-T 0308 16S ribosomal RNA gene, partial sequence
- accession: HM037365
- length: 1436
- database: nuccore
- NCBI tax ID: 763782
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sphaerisporangium krabiense NBRC 107571 | GCA_016863355 | contig | ncbi | 763782 |
| 66792 | Sphaerisporangium krabiense DSM 45790 | GCA_014200435 | contig | ncbi | 763782 |
| 66792 | Sphaerisporangium krabiense strain DSM 45790 | 763782.3 | wgs | patric | 763782 |
| 66792 | Sphaerisporangium krabiense strain NBRC 107571 | 763782.4 | wgs | patric | 763782 |
| 66792 | Sphaerisporangium krabiense DSM 45790 | 2844862658 | draft | img | 763782 |
GC content
- @ref: 18201
- GC-content: 72
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 88.499 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.371 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 91.253 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 89.141 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.4 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 86.5 | no |
External links
@ref: 18201
culture collection no.: DSM 45790, BCC 21702, NBRC 107571
straininfo link
- @ref: 85649
- straininfo: 398851
literature
- topic: Phylogeny
- Pubmed-ID: 21257689
- title: Sphaerisporangium krabiense sp. nov., isolated from soil.
- authors: Suriyachadkun C, Chunhametha S, Ngaemthao W, Tamura T, Kirtikara K, Sanglier JJ, Kitpreechavanich V
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.027151-0
- year: 2011
- mesh: Actinomycetales/*classification/genetics/*isolation & purification/metabolism, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Thailand
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18201 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45790) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45790 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 85649 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398851.1 | StrainInfo: A central database for resolving microbial strain identifiers |