Strain identifier
BacDive ID: 16629
Type strain: 
Species: Sphaerisporangium siamense
Strain Designation: SR14.14
Strain history: <- J. Nakagawa, NBRC; NBRC 107570 <- BCC; BCC 41491 <- K. Duangmal; SR14.14
NCBI tax ID(s): 795645 (species)
version 9.1 (current version)
General
@ref: 18200
BacDive-ID: 16629
DSM-Number: 45784
keywords: genome sequence, 16S sequence, Bacteria, spore-forming
description: Sphaerisporangium siamense SR14.14 is a spore-forming bacterium that was isolated from rhizospheric soil of rubber tree.
NCBI tax id
- NCBI tax id: 795645
- Matching level: species
strain history
- @ref: 18200
- history: <- J. Nakagawa, NBRC; NBRC 107570 <- BCC; BCC 41491 <- K. Duangmal; SR14.14
doi: 10.13145/bacdive16629.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Streptosporangiaceae
- genus: Sphaerisporangium
- species: Sphaerisporangium siamense
- full scientific name: Sphaerisporangium siamense Duangmal et al. 2012
@ref: 18200
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptosporangiaceae
genus: Sphaerisporangium
species: Sphaerisporangium siamense
full scientific name: Sphaerisporangium siamense Duangmal et al. 2012
strain designation: SR14.14
type strain: yes
Morphology
multimedia
- @ref: 18200
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45784.jpg
- caption: Medium 84 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 18200 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 18200 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf | |
| 18200 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
culture temp
- @ref: 18200
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: aerobe
- confidence: 91.144
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 90.408 |
| 69481 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 18200
- sample type: rhizospheric soil of rubber tree
- geographic location: Nakhon Sawan
- country: Thailand
- origin.country: THA
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant | #Rhizosphere |
Safety information
risk assessment
- @ref: 18200
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18200
- description: Sphaerisporangium siamense strain SR14.14 16S ribosomal RNA gene, partial sequence
- accession: HM043727
- length: 1419
- database: nuccore
- NCBI tax ID: 795645
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sphaerisporangium siamense NBRC 107570 | GCA_016863415 | contig | ncbi | 795645 |
| 66792 | Sphaerisporangium siamense DSM 45784 | GCA_014205275 | contig | ncbi | 795645 |
| 66792 | Sphaerisporangium siamense strain DSM 45784 | 795645.3 | wgs | patric | 795645 |
| 66792 | Sphaerisporangium siamense strain NBRC 107570 | 795645.4 | wgs | patric | 795645 |
| 66792 | Sphaerisporangium siamense DSM 45784 | 2873314349 | draft | img | 795645 |
GC content
- @ref: 18200
- GC-content: 71.9
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 89.982 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.897 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 91.144 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 90.408 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.4 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 85.5 | no |
External links
@ref: 18200
culture collection no.: DSM 45784, BCC 41491, NBRC 107570, NRRL B-24805
straininfo link
- @ref: 85650
- straininfo: 397286
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21407236 | Sphaerisporangium siamense sp. nov., an actinomycete isolated from rubber-tree rhizospheric soil. | Duangmal K, Mingma R, Pathom-Aree W, Inahashi Y, Matsumoto A, Thamchaipenet A, Takahashi Y | J Antibiot (Tokyo) | 10.1038/ja.2011.17 | 2011 | Actinobacteria/*classification/genetics/isolation & purification, *DNA, Bacterial, Genotype, Hevea/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Bacterial, *RNA, Ribosomal, 16S, Rhizosphere, Sequence Analysis, RNA, *Soil Microbiology | Genetics |
| Phylogeny | 36253621 | Sphaerisporangium fuscum sp. nov., Isolated from Sediment of Anmucuo Lake in Tibet Autonomous Region of China. | Guo Y, Li J, Li L, Liu C | Curr Microbiol | 10.1007/s00284-022-03067-1 | 2022 | *Actinomycetales, Cardiolipins, DNA, Bacterial/chemistry/genetics, Diaminopimelic Acid/analysis/chemistry, Fatty Acids/chemistry, Glucose, Lakes/analysis, Nucleotides, Peptidoglycan/analysis, *Phosphatidylethanolamines, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Ribose, Sequence Analysis, DNA, Soil Microbiology, Tibet, Vitamin K 2/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18200 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45784) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45784 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 85650 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID397286.1 | StrainInfo: A central database for resolving microbial strain identifiers |