Strain identifier

BacDive ID: 16629

Type strain: Yes

Species: Sphaerisporangium siamense

Strain Designation: SR14.14

Strain history: <- J. Nakagawa, NBRC; NBRC 107570 <- BCC; BCC 41491 <- K. Duangmal; SR14.14

NCBI tax ID(s): 795645 (species)

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General

@ref: 18200

BacDive-ID: 16629

DSM-Number: 45784

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Sphaerisporangium siamense SR14.14 is a spore-forming, mesophilic bacterium that was isolated from rhizospheric soil of rubber tree.

NCBI tax id

  • NCBI tax id: 795645
  • Matching level: species

strain history

  • @ref: 18200
  • history: <- J. Nakagawa, NBRC; NBRC 107570 <- BCC; BCC 41491 <- K. Duangmal; SR14.14

doi: 10.13145/bacdive16629.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Sphaerisporangium
  • species: Sphaerisporangium siamense
  • full scientific name: Sphaerisporangium siamense Duangmal et al. 2012

@ref: 18200

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Sphaerisporangium

species: Sphaerisporangium siamense

full scientific name: Sphaerisporangium siamense Duangmal et al. 2012

strain designation: SR14.14

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no97.343
69480100positive

multimedia

  • @ref: 18200
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45784.jpg
  • caption: Medium 84 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18200GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
18200STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf
18200ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

  • @ref: 18200
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

isolation

  • @ref: 18200
  • sample type: rhizospheric soil of rubber tree
  • geographic location: Nakhon Sawan
  • country: Thailand
  • origin.country: THA
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Tree
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

  • @ref: 18200
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18200
  • description: Sphaerisporangium siamense strain SR14.14 16S ribosomal RNA gene, partial sequence
  • accession: HM043727
  • length: 1419
  • database: ena
  • NCBI tax ID: 795645

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sphaerisporangium siamense NBRC 107570GCA_016863415contigncbi795645
66792Sphaerisporangium siamense DSM 45784GCA_014205275contigncbi795645
66792Sphaerisporangium siamense strain DSM 45784795645.3wgspatric795645
66792Sphaerisporangium siamense strain NBRC 107570795645.4wgspatric795645
66792Sphaerisporangium siamense DSM 457842873314349draftimg795645

GC content

  • @ref: 18200
  • GC-content: 71.9

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno92.319no
flagellatedno98.148no
gram-positiveyes89.974no
anaerobicno99.2no
halophileno92.596no
spore-formingyes94.515no
thermophileno96.862yes
glucose-utilyes87.013no
aerobicyes91.851no
glucose-fermentno92.568no

External links

@ref: 18200

culture collection no.: DSM 45784, BCC 41491, NBRC 107570, NRRL B-24805

straininfo link

  • @ref: 85650
  • straininfo: 397286

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21407236Sphaerisporangium siamense sp. nov., an actinomycete isolated from rubber-tree rhizospheric soil.Duangmal K, Mingma R, Pathom-Aree W, Inahashi Y, Matsumoto A, Thamchaipenet A, Takahashi YJ Antibiot (Tokyo)10.1038/ja.2011.172011Actinobacteria/*classification/genetics/isolation & purification, *DNA, Bacterial, Genotype, Hevea/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Bacterial, *RNA, Ribosomal, 16S, Rhizosphere, Sequence Analysis, RNA, *Soil MicrobiologyGenetics
Phylogeny36253621Sphaerisporangium fuscum sp. nov., Isolated from Sediment of Anmucuo Lake in Tibet Autonomous Region of China.Guo Y, Li J, Li L, Liu CCurr Microbiol10.1007/s00284-022-03067-12022*Actinomycetales, Cardiolipins, DNA, Bacterial/chemistry/genetics, Diaminopimelic Acid/analysis/chemistry, Fatty Acids/chemistry, Glucose, Lakes/analysis, Nucleotides, Peptidoglycan/analysis, *Phosphatidylethanolamines, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Ribose, Sequence Analysis, DNA, Soil Microbiology, Tibet, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitle
18200Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45784)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45784
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85650Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397286.1StrainInfo: A central database for resolving microbial strain identifiers