Name: Sphaerisporangium melleum 3-28(8)
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16624

Type strain:

Species: Sphaerisporangium melleum

Strain Designation: 3-28(8)

Culture col. no.: DSM 44954, JCM 13064, NBRC 107356, BCC 36478, CGMCC 4.5528

Strain history: I. Ara 3-28(8).

NCBI tax ID(s): 321316 (species)

SI-ID 297460

DSM 44954, JCM 13064

Special Collections

DSMZ
JCM

Other strains from Sphaerisporangium melleum

Section

Sphaerisporangium melleum 3-28 is a spore-forming bacterium that was isolated from sandy soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Sphaerisporangium*
	Species	**Sphaerisporangium melleum**
	Full Scientific Name (LPSN)	Sphaerisporangium melleum corrig. Ara and Kudo 2007

Synonym

Sphaerosporangium melleum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12207]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12207]

Culture medium growth

[Ref.: #12207]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12207]

Culture medium composition

expand / minimize

[Ref.: #12207]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #12207]

Culture medium growth

[Ref.: #12207]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #12207]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(III,VIII-H₄), MK-9(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12207]	Sample type/isolated from	sandy soil
[Ref.: #12207]	Geographic location (country and/or sea, region)	Chokoria
[Ref.: #12207]	Country	Bangladesh
[Ref.: #12207]	Country ISO 3 Code	BGD
[Ref.: #12207]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sandy soil at a forest-side waterfall
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chokoria, Cox's Bazar
[Ref.: #67770]	Country	Bangladesh
[Ref.: #67770]	Country ISO 3 Code	BGD
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12207]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12207]	Sphaerisporangium melleum gene for 16S rRNA, partial sequence, strain: 3-28(8)	AB208714	1503	GenBank ENA	321316 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphaerisporangium melleum NBRC 107356	GCA_016863375	contig	GenBank ENA	321316 tax ID	*
[Ref.: #66792]	Sphaerisporangium melleum JCM 13064	GCA_014646695	scaffold	GenBank ENA	321316 tax ID	*
[Ref.: #66792]	Sphaerisporangium melleum strain JCM 13064	321316.3	wgs	PATRIC	321316 tax ID	*
[Ref.: #66792]	Sphaerisporangium melleum strain NBRC 107356	321316.4	wgs	PATRIC	321316 tax ID	*

[Ref.: #12207]	GC-content	71 mol%
[Ref.: #67770]	GC-content	71 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphaerisporangium melleum JCM 13064 NCBI: GCA_014646695.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphaerisporangium melleum JCM 13064 NCBI: GCA_014646695.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.004	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	87.534	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.032	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	87.056	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	84	no

Availability in culture collections External links

[Ref.: #12207]

Culture collection no.

DSM 44954, JCM 13064, NBRC 107356, BCC 36478, CGMCC 4.5528

[Ref.: #85645]

SI-ID 297460

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphaerisporangium corydalis sp. nov., isolated from the root of Corydalis yanhusuo L.	Wang X, Liu C, Cheng J, Zhang Y, Ma Z, Li L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0471-x	2015	*
Phylogeny	Sphaerisporangium dianthi sp. nov., an endophytic actinomycete isolated from a root of Dianthus chinensis L.	Xing J, Liu C, Zhang Y, He H, Zhou Y, Li L, Zhao J, Liu S, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0298-x	2014	*

References

#12207

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44954

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85645

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297460.1 )

* These data were automatically processed and therefore are not curated

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