Sphaerisporangium melleum (DSM 44954, JCM 13064, NBRC 107356)

Name: Sphaerisporangium melleum (DSM 44954, JCM 13064, NBRC 107356)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16624

Type strain

Strain Designation 3-28(8)

Culture col. no. DSM 44954 JCM 13064 NBRC 107356 3-28(8) CGMCC 4.5528 1 more

NCBI tax ID(s) 321316

Special Collections DSMZ JCM

Links

Sphaerisporangium melleum 3-28 is a mesophilic prokaryote that was isolated from sandy soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 297460

DSM 44954,JCM 13064

@ref 20215

Last LPSN update 2025-12-16 09:50:53

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Sphaerisporangium

Species Sphaerisporangium melleum

Full scientific name Sphaerisporangium melleum corrig. Ara and Kudo 2007

Synonyms (1)

Sphaerosporangium melleum

BacDive ID	Other strains from **Sphaerisporangium melleum** (3)	Type strain
161310	S. melleum JCM 13065
161311	S. melleum JCM 13066
161312	S. melleum JCM 13068

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.2

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12207	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
12207	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
12207	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.9

Observation

67770

Observationquinones: MK-9(III,VIII-H₄), MK-9(H₆)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12207	sandy soil	Chokoria	Bangladesh	BGD	Asia
67770	Sandy soil at a forest-side waterfall	Chokoria, Cox's Bazar	Bangladesh	BGD	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12207	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1686337v1 assembly for Sphaerisporangium melleum NBRC 107356	contig	GCA_016863375	321316.4	8062106276	321316	44.21
124043	ASM4243052v1 assembly for Sphaerisporangium melleum JCM 13064	contig	GCA_042430525			321316	37.88
66792	ASM1464669v1 assembly for Sphaerisporangium melleum JCM 13064	scaffold	GCA_014646695	321316.3	2989285249	321316

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12207	Sphaerisporangium melleum gene for 16S rRNA, partial sequence, strain: 3-28(8)	AB208714	1503		321316

GC content

@ref	GC-content (mol%)	Method
12207	71
67770	71	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sphaerisporangium melleum JCM 13064
NCBI: GCA_014646695

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	71.30	no
125439	motility	BacteriaNetⓘ	no	83.10	no
125439	gram_stain	BacteriaNetⓘ	positive	99.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphaerisporangium melleum JCM 13064
NCBI: GCA_014646695.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.00	no
125438	anaerobic	anaerobicⓘ	no	87.53	no
125438	aerobic	aerobicⓘ	yes	87.03	no
125438	spore-forming	spore-formingⓘ	yes	87.06	no
125438	thermophilic	thermophileⓘ	no	95.50	yes
125438	flagellated	motile2+ⓘ	no	84.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphaerisporangium corydalis sp. nov., isolated from the root of Corydalis yanhusuo L.	Wang X, Liu C, Cheng J, Zhang Y, Ma Z, Li L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0471-x	2015
Phylogeny	Sphaerisporangium dianthi sp. nov., an endophytic actinomycete isolated from a root of Dianthus chinensis L.	Xing J, Liu C, Zhang Y, He H, Zhou Y, Li L, Zhao J, Liu S, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0298-x	2014

References

#12207	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44954
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Sphaerisporangium melleum (DSM 44954, JCM 13064, NBRC 107356)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016863375

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media