Sphaerisporangium cinnabarinum (DSM 44094, ATCC 31213, JCM 3291)

Name: Sphaerisporangium cinnabarinum (DSM 44094, ATCC 31213, JCM 3291)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16623

Type strain

Strain Designation Chas Pfizer Inc. SS 1405

Culture col. no. DSM 44094 ATCC 31213 JCM 3291 KCC A-0291 Chas Pfizer Inc. SS 1405 6 more

NCBI tax ID(s) 47482

Special Collections DSMZ JCM

History <- JCM <- KCC <- ATCC <- Chas. Pfizer & Co., FD 25488 (Streptosporangium cinnabarinum) KCC A-0291 <-- ATCC 31213 <-- Chas. Pfizer & Co.; FD 25488.

Links

Sphaerisporangium cinnabarinum Chas Pfizer Inc. SS 1405 is a bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 39943

ATCC 31213,DSM 44094,JCM 3291,CCRC 13396,VKM Ac-1995,BCRC 13396

@ref 20215

Last LPSN update 2026-02-09 11:22:01

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Sphaerisporangium

Species Sphaerisporangium cinnabarinum

Full scientific name Sphaerisporangium cinnabarinum corrig. Ara and Kudo 2007

Synonyms (1)

Sphaerosporangium cinnabarinum

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.9

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
11479	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)		Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
11479	N-Z-AMINE-MEDIUM (DSMZ Medium 554)		Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
11479	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.8

Compound production

@ref	Compound
11479	antibiotics 43334 and 43596
11479	antibiotic 43.596
67770	Antibiotics 43,334 and 43,596

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
11479	soil	Philippines	PHL	Asia
67770	Soil	Philippines	PHL	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11479	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM305245v1 assembly for Sphaerisporangium cinnabarinum ATCC 31213	scaffold	GCA_003052455	47482.4	8048154562	47482	9.76
66792	Sphaerisporangium cinnabarinum FD25488, DSM 44094	complete			2516653028	47482

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
11479	S.cinnabarium DNA for 16S ribosomal RNA gene	X89939	1448		47482

GC content

@ref	GC-content (mol%)	Method
11479	70
67770	70	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Sphaerisporangium cinnabarinum ATCC 31213
NCBI: GCA_003052455

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	83.80	no
125439	motility	BacteriaNetⓘ	no	85.80	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphaerisporangium cinnabarinum strain ATCC 31213
PATRIC: 47482.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.98	no
125438	anaerobic	anaerobicⓘ	no	90.37	no
125438	spore-forming	spore-formingⓘ	no	54.30	no
125438	aerobic	aerobicⓘ	yes	75.69	no
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	69.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	High-Quality Draft Genome Sequence of Sphaerisporangium cinnabarinum ATCC 31213.	Christensen LFB, Otzen D, Dueholm MS	Genome Announc	10.1128/genomeA.00456-18	2018
	Sphaerisporangium perillae sp. nov., isolated from the root of Perilla frutescens (Linn.) Britt.	Wang T, Gao C, Chen H, Yang J, Du R, Zuo G, Zhao J, Xiang W, Liu C.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005773	2023
Phylogeny	Sphaerisporangium rhizosphaerae sp. nov., an actinomycete isolated from the rhizosphere soil of a rubber tree (Hevea brasiliensis Muell. Arg).	Mu S, Zhao Q, Zhao J, Cao T, Zhao X, Guo X, Li Y, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002912	2018
Phylogeny	Sphaerisporangium corydalis sp. nov., isolated from the root of Corydalis yanhusuo L.	Wang X, Liu C, Cheng J, Zhang Y, Ma Z, Li L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0471-x	2015
Phylogeny	Sphaerisporangium dianthi sp. nov., an endophytic actinomycete isolated from a root of Dianthus chinensis L.	Xing J, Liu C, Zhang Y, He H, Zhou Y, Li L, Zhao J, Liu S, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0298-x	2014
Phylogeny	Sphaerisporangium rufum sp. nov., an endophytic actinomycete from roots of Oryza sativa L.	Mingma R, Duangmal K, Trakulnaleamsai S, Thamchaipenet A, Matsumoto A, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.057885-0	2013

References

#11479	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44094
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphaerisporangium cinnabarinum (DSM 44094, ATCC 31213, JCM 3291)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Compound production

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003052455

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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