Name: Sphaerisporangium cinnabarinum Chas Pfizer Inc. SS 1405
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16623

Type strain:

Species: Sphaerisporangium cinnabarinum

Strain Designation: Chas Pfizer Inc. SS 1405

Culture col. no.: DSM 44094, ATCC 31213, JCM 3291, KCC A-0291, BCC 36480, BCRC 13396, CGMCC 4.5522, IMSNU 22115, TBRC 572, VKM Ac-1995

Strain history: KCC A-0291 <-- ATCC 31213 <-- Chas. Pfizer & Co.; FD 25488.

NCBI tax ID(s): 47482 (species)

SI-ID 39943

ATCC 31213, DSM 44094, JCM 3291, CCRC 13396, VKM Ac-1995, BCRC 13396

Special Collections

DSMZ
JCM

Section

Sphaerisporangium cinnabarinum Chas Pfizer Inc. SS 1405 is a bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Sphaerisporangium*
	Species	**Sphaerisporangium cinnabarinum**
	Full Scientific Name (LPSN)	Sphaerisporangium cinnabarinum corrig. Ara and Kudo 2007

Synonym

Sphaerosporangium cinnabarinum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11479]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #11479]

Culture medium growth

[Ref.: #11479]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11479]

Culture medium composition

expand / minimize

[Ref.: #11479]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #11479]

Culture medium growth

[Ref.: #11479]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11479]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11479]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #11479]	Name of produced compound	antibiotics 43334 and 43596
[Ref.: #11479]	Name of produced compound	antibiotic 43.596
[Ref.: #67770]	Name of produced compound	Antibiotics 43,334 and 43,596

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11479]	Sample type/isolated from	soil
[Ref.: #11479]	Country	Philippines
[Ref.: #11479]	Country ISO 3 Code	PHL
[Ref.: #11479]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Philippines
[Ref.: #67770]	Country ISO 3 Code	PHL
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11479]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11479]	S.cinnabarium DNA for 16S ribosomal RNA gene	X89939	1448	GenBank ENA	47482 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphaerisporangium cinnabarinum ATCC 31213	GCA_003052455	scaffold	GenBank ENA	47482 tax ID
[Ref.: #66792]	Sphaerisporangium cinnabarinum strain ATCC 31213	47482.4	wgs	PATRIC	47482 tax ID	*
[Ref.: #66792]	Sphaerisporangium cinnabarinum FD25488, DSM 44094	2516653028	draft	JGI IMG/M	47482 tax ID	*

[Ref.: #11479]	GC-content	70 mol%
[Ref.: #67770]	GC-content	70 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphaerisporangium cinnabarinum strain ATCC 31213 PATRIC: 47482.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.975	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	90.37	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	54.298	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	75.686	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	69	no

Availability in culture collections External links

[Ref.: #11479]

Culture collection no.

DSM 44094, ATCC 31213, JCM 3291, KCC A-0291, BCC 36480, BCRC 13396, CGMCC 4.5522, IMSNU 22115, TBRC 572, VKM Ac-1995

[Ref.: #85644]

SI-ID 39943

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphaerisporangium rhizosphaerae sp. nov., an actinomycete isolated from the rhizosphere soil of a rubber tree (Hevea brasiliensis Muell. Arg).	Mu S, Zhao Q, Zhao J, Cao T, Zhao X, Guo X, Li Y, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002912	2018	*
Genetics	High-Quality Draft Genome Sequence of Sphaerisporangium cinnabarinum ATCC 31213.	Christensen LFB, Otzen D, Dueholm MS	Genome Announc	10.1128/genomeA.00456-18	2018	*
Phylogeny	Sphaerisporangium corydalis sp. nov., isolated from the root of Corydalis yanhusuo L.	Wang X, Liu C, Cheng J, Zhang Y, Ma Z, Li L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0471-x	2015	*
Phylogeny	Sphaerisporangium dianthi sp. nov., an endophytic actinomycete isolated from a root of Dianthus chinensis L.	Xing J, Liu C, Zhang Y, He H, Zhou Y, Li L, Zhao J, Liu S, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0298-x	2014	*
Phylogeny	Sphaerisporangium rufum sp. nov., an endophytic actinomycete from roots of Oryza sativa L.	Mingma R, Duangmal K, Trakulnaleamsai S, Thamchaipenet A, Matsumoto A, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.057885-0	2013	*

References

#11479

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44094

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85644

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39943.1 )

* These data were automatically processed and therefore are not curated

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Sphaerisporangium cinnabarinum strain ATCC 31213

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