Rhodanobacter sp. (UCCCB112, B2A1Ga4)

Name: Rhodanobacter sp. (UCCCB112, B2A1Ga4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 166096

Type strain

Strain Designation B2A1Ga4

Culture col. no. UCCCB112 B2A1Ga4

NCBI tax ID(s) 1883446

Special Collections UCCCB

History Chung A.P. University of Coimbra

B2A1Ga4 is a bacterium of the family Rhodanobacteraceae.

genome sequence Bacteria

Name and taxonomic classification

Culture Collection Numbers

UCCCB112 B2A1Ga4

@ref 20215

Last LPSN update 2026-02-09 11:40:15

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Rhodanobacteraceae

Genus Rhodanobacter

Full scientific name Rhodanobacter Nalin et al. 1999

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.494
125439	negative	99.1

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67772	positive	optimum	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.2

Spore formation

@ref	Spore formation	Confidence
125439		97.1

Isolation, sampling and environmental information

Isolation

@ref	Country	Country ISO 3 Code	Continent
67772	Portugal	PRT	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1810131v1 assembly for Rhodanobacter sp. B2A1Ga4	contig	GCA_018101315	2778647.3	2778647	66.41

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Rhodanobacter sp. B2A1Ga4
NCBI: GCA_018101315

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.10	no
125439	motility	BacteriaNetⓘ	yes	85.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rhodanobacter sp. B2A1Ga4
PATRIC: 2778647.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.49	no
125438	anaerobic	anaerobicⓘ	no	97.25	no
125438	spore-forming	spore-formingⓘ	no	89.91	no
125438	aerobic	aerobicⓘ	yes	82.87	no
125438	thermophilic	thermophileⓘ	no	95.76	yes
125438	flagellated	motile2+ⓘ	yes	64.12	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	A DedA Family Membrane Protein in Indium Extrusion in Rhodanobacter sp. B2A1Ga4.	Caldeira JB, Chung AP, Piedade AP, Morais PV, Branco R	Front Microbiol	10.3389/fmicb.2021.772127	2021
	Relevance of FeoAB system in Rhodanobacter sp. B2A1Ga4 resistance to heavy metals, aluminium, gallium, and indium.	Caldeira JB, Chung AP, Morais PV, Branco R	Appl Microbiol Biotechnol	10.1007/s00253-021-11254-6	2021
Biotechnology	Genome mining to unravel potential metabolic pathways linked to gallium bioleaching ability of bacterial mine isolates.	Chung AP, Francisco R, Morais PV, Branco R	Front Microbiol	10.3389/fmicb.2022.970147	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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Rhodanobacter sp. (UCCCB112, B2A1Ga4)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_018101315

Genome-based predictions

Predictions

Literature

Literature

References

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