Strain identifier
BacDive ID: 166096
Type strain: 
Species: Rhodanobacter sp.
Strain Designation: B2A1Ga4
Strain history: Chung A.P. University of Coimbra
NCBI tax ID(s): 1883446 (species)
version 9.1 (current version)
General
@ref: 67772
BacDive-ID: 166096
keywords: genome sequence, Bacteria, Gram-negative
description: Rhodanobacter sp. B2A1Ga4 is a Gram-negative bacterium of the family Rhodanobacteraceae.
NCBI tax id
- NCBI tax id: 1883446
- Matching level: species
strain history
- @ref: 67772
- history: Chung A.P. University of Coimbra
doi: 10.13145/bacdive166096.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Rhodanobacteraceae
- genus: Rhodanobacter
- species: Rhodanobacter sp.
- full scientific name: Rhodanobacter Nalin et al. 1999
@ref: 67772
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Lysobacterales
family: Rhodanobacteraceae
genus: Rhodanobacter
species: Rhodanobacter sp.
strain designation: B2A1Ga4
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.494
Culture and growth conditions
culture temp
- @ref: 67772
- growth: positive
- type: optimum
- temperature: 25
Isolation, sampling and environmental information
isolation
- @ref: 67772
- country: Portugal
- origin.country: PRT
- continent: Europe
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodanobacter sp. B2A1Ga4 | 2778647.3 | wgs | patric | 2778647 |
| 66792 | Rhodanobacter sp. B2A1Ga4 | GCA_018101315 | contig | ncbi | 2778647 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.494 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.246 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.914 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 82.873 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.761 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 64.118 | no |
External links
@ref: 67772
culture collection no.: UCCCB112
literature
| Pubmed-ID | title | authors | journal | DOI | year | mesh | topic |
|---|---|---|---|---|---|---|---|
| 33791837 | Relevance of FeoAB system in Rhodanobacter sp. B2A1Ga4 resistance to heavy metals, aluminium, gallium, and indium. | Caldeira JB, Chung AP, Morais PV, Branco R | Appl Microbiol Biotechnol | 10.1007/s00253-021-11254-6 | 2021 | Aluminum, Bacterial Proteins/genetics, *Gallium, Indium, *Metals, Heavy/toxicity | |
| 34925279 | A DedA Family Membrane Protein in Indium Extrusion in Rhodanobacter sp. B2A1Ga4. | Caldeira JB, Chung AP, Piedade AP, Morais PV, Branco R | Front Microbiol | 10.3389/fmicb.2021.772127 | 2021 | ||
| 36188007 | Genome mining to unravel potential metabolic pathways linked to gallium bioleaching ability of bacterial mine isolates. | Chung AP, Francisco R, Morais PV, Branco R | Front Microbiol | 10.3389/fmicb.2022.970147 | 2022 | Biotechnology |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67772 | Curators of the UCCCB | https://ucccb.uc.pt/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |