Name: Rhodanobacter sp. Root561
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132115

Type strain:

Species: Rhodanobacter sp.

Strain Designation: Root561

Culture col. no.: DSM 102533

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root561 <- Y. Bai

NCBI tax ID(s): 1883446 (species)

SI-ID 404497

DSM 102533

Special Collections

Other strains from Rhodanobacter sp.

Section

Rhodanobacter sp. Root561 is a Gram-negative bacterium that was isolated from roots of Arabidopsis thaliana ecotype Columbia-0 .

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Rhodanobacteraceae*
	Genus	*Rhodanobacter*
	Full Scientific Name (LPSN)	Rhodanobacter Nalin et al. 1999

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23905]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #23905]

Culture medium growth

[Ref.: #23905]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23905]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23905]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23905]	Sample type/isolated from	roots of Arabidopsis thaliana ecotype Columbia-0 (Col-0)
[Ref.: #23905]	Host species	Arabidopsis thaliana
[Ref.: #23905]	Geographic location (country and/or sea, region)	Cologne (50.958N 6.856E)
[Ref.: #23905]	Country	Germany
[Ref.: #23905]	Country ISO 3 Code	DEU
[Ref.: #23905]	Continent	Europe
[Ref.: #23905]	Geographic location	50.9580°/6.8560°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodanobacter sp. Root561	GCA_001427365	scaffold	GenBank ENA	1736560 tax ID	*
[Ref.: #66792]	Rhodanobacter sp. Root561	1736560.3	wgs	PATRIC	1736560 tax ID	*
[Ref.: #66792]	Rhodanobacter sp. Root561	2643221562	draft	JGI IMG/M	1736560 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodanobacter sp. Root561 Root561 NCBI: GCA_001427365.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.735	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.805	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.775	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.717	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	59.38	no

Availability in culture collections External links

[Ref.: #23905]

Culture collection no.

DSM 102533

[Ref.: #90471]

SI-ID 404497

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23905

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102533

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90471

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404497.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Rhodanobacter sp. in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Rhodanobacter sp. Root561 Root561

Change proposal

Change proposal