Name: Pararhodobacter zhoushanensis ZQ420
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 166097

Type strain:

Species: Pararhodobacter zhoushanensis

Strain Designation: ZQ420

Culture col. no.: KCTC 62579, MCCC 1K03530

NCBI tax ID(s): 2184063 (species), 2479545 (species)

Special Collections

Section

Pararhodobacter zhoushanensis ZQ420 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from marine sediment.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Pararhodobacter*
	Species	**Pararhodobacter zhoushanensis**
	Full Scientific Name (LPSN)	Pararhodobacter zhoushanensis Zhang et al. 2020

Synonym

Pararhodobacter marinus

Information on morphological and physiological properties Morphology

[Ref.: #68203]	Gram stain	negative

[Ref.: #68203]	Cell length	1.0-2.8 µm

[Ref.: #68203]	Cell width	0.3-0.9 µm

[Ref.: #68203]	Cell shape	rod-shaped

[Ref.: #68203]	Motility	no

[Ref.: #68203]	Colony size	1 mm
[Ref.: #68203]	Colony color	cream-coloured
[Ref.: #68203]	Colony shape	circular
[Ref.: #68203]	Incubation period	1 day
[Ref.: #68203]	Cultivation medium used	Marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #68203]			growth	10-45 °C
[Ref.: #68203]			optimum	35-40 °C

	pH	Kind of pH		pH
[Ref.: #68203]			optimum	6.5-7.5
[Ref.: #68203]			growth	5.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68203]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %91

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68203]		NaCl		growth	0-12	%(w/v)
[Ref.: #68203]		NaCl		optimum	1-2	%(w/v)

[Ref.: #68203]

Observation

Cells divide by binary fission

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68203]	2-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #68203]	arbutin ChEBI	-	builds acid from
[Ref.: #68203]	casein	+	hydrolysis
[Ref.: #68203]	D-arabitol ChEBI	+	builds acid from
[Ref.: #68203]	D-fructose ChEBI	+	builds acid from
[Ref.: #68203]	D-fucose ChEBI	+	builds acid from
[Ref.: #68203]	D-glucose ChEBI	-	builds acid from
[Ref.: #68203]	D-mannitol ChEBI	+	builds acid from
[Ref.: #68203]	D-ribose ChEBI	+	builds acid from
[Ref.: #68203]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #68203]	D-xylose ChEBI	+	builds acid from
[Ref.: #68203]	esculin ChEBI	-	hydrolysis
[Ref.: #68203]	esculin ChEBI	+	builds acid from
[Ref.: #68203]	gelatin ChEBI	-	hydrolysis
[Ref.: #68203]	glucose ChEBI	-	fermentation
[Ref.: #68203]	L-arabinose ChEBI	+	builds acid from
[Ref.: #68203]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #68203]	N-acetyl-D-glucosamine ChEBI	-	builds acid from
[Ref.: #68203]	salicin ChEBI	+	builds acid from
[Ref.: #68203]	starch ChEBI	+	hydrolysis
[Ref.: #68203]	tween 20 ChEBI	+	hydrolysis
[Ref.: #68203]	tween 40 ChEBI	+	hydrolysis
[Ref.: #68203]	tween 60 ChEBI	-	hydrolysis
[Ref.: #68203]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #68203]	amoxicillin ChEBI				yes	20	µg (disc)
[Ref.: #68203]	carbenicillin ChEBI				yes	100	µg (disc)
[Ref.: #68203]	cefazolin ChEBI				yes	30	µg (disc)
[Ref.: #68203]	cephradine ChEBI				yes	30	µg (disc)
[Ref.: #68203]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #68203]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #68203]	oxacillin ChEBI				yes	1	µg (disc)
[Ref.: #68203]	polymyxin b ChEBI	yes	300	Unit (disc)
[Ref.: #68203]	vancomycin ChEBI	yes	30	µg (disc)

	Metabolite	Production
[Ref.: #68203]	acetoin ChEBI	no
[Ref.: #68203]	hydrogen sulfide ChEBI	yes
[Ref.: #68203]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #68203]		acetoin ChEBI	-
[Ref.: #68203]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68203]	acid phosphatase	+	3.1.3.2
[Ref.: #68203]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68203]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #68203]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68203]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68203]	arginine dihydrolase	+	3.5.3.6
[Ref.: #68203]	beta-galactosidase	-	3.2.1.23
[Ref.: #68203]	catalase	+	1.11.1.6
[Ref.: #68203]	cystine arylamidase	+	3.4.11.3
[Ref.: #68203]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68203]	esterase (C 4)	+
[Ref.: #68203]	esterase Lipase (C 8)	+
[Ref.: #68203]	leucine arylamidase	+	3.4.11.1
[Ref.: #68203]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68203]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68203]	nitrate reductase	+	1.7.99.4
[Ref.: #68203]	trypsin	-	3.4.21.4
[Ref.: #68203]	urease	+	3.5.1.5
[Ref.: #68203]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68203]

Fatty acid	Percentage
C18:1 w7c	60.9
C16:0	15.5
C18:1 w7c 11-Methyl	10
C10:0 3OH	4.7
C19:0 cyclo w8c	4
C18:0	1.6
C16:1 w7c/C16:1 w6c	1.5
C10:0	0.7
C17:0 cyclo	0.7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #68203]	Sample type/isolated from	marine sediment
[Ref.: #68203]	Sampling date	2017-08-01
[Ref.: #68203]	Geographic location (country and/or sea, region)	Zhoushan Island
[Ref.: #68203]	Country	China
[Ref.: #68203]	Country ISO 3 Code	CHN
[Ref.: #68203]	Continent	Asia
[Ref.: #68203]	Geographic location	29.7667°/123.4500°
[Ref.: #68203]	Enrichment culture	Marine broth 2216
[Ref.: #68203]	Enrichment culture duration	3 days
[Ref.: #68203]	Enrichment culture temperature	28 ̊C
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence MH087458 (>99% sequence identity) for Pararhodobacter zhoushanensis subclade from Microbeatlas

Aquatic Samples	62
Soil Samples	4
Animal Samples	48
Plant Samples
Total Samples	114

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68203]	Pararhodobacter sp. strain ZQ420 16S ribosomal RNA gene, partial sequence	MH087458	1426	GenBank ENA	2127056 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68203]	Pararhodobacter zhoushanensis ZQ420	GCA_003990445	scaffold	GenBank ENA	2479545 tax ID
[Ref.: #66792]	Pararhodobacter zhoushanensis ZQ420	2883834571	draft	JGI IMG/M	2479545 tax ID	*

[Ref.: #68203]

GC-content

64.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pararhodobacter zhoushanensis ZQ420 NCBI: GCA_003990445.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	91	no

Availability in culture collections External links

[Ref.: #68203]

Culture collection no.

KCTC 62579, MCCC 1K03530

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pararhodobacter marinus sp. nov., a bacterium isolated from marine sediment in the East China Sea and emended description of the genus Pararhodobacter.	Zhang W, Chen C, Yuan Y, Su D, Ding L, Epstein SS, He S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003627	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68203

Weiyan Zhang, Can Chen, Ye Yuan, Dengquan Su, Lijian Ding, Slava S. Epstein and Shan He: Pararhodobacter marinus sp. nov., a bacterium isolated from marine sediment in the East China Sea and emended description of the genus Pararhodobacter. IJSEM 69: 3293 - 3298 2019 ( DOI 10.1099/ijsem.0.003627 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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