Name: Salinicola halophyticus CR45
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 166093

Type strain:

Species: Salinicola halophyticus

Strain Designation: CR45

Culture col. no.: UCCCB99, CECT 9341, LMG 30105

Strain history: Fidalgo C. University of Aveiro

NCBI tax ID(s): 1808881 (species)

Special Collections

UCCCB

Section

Salinicola halophyticus CR45 is a motile bacterium that was isolated from Halimione portulacoides, surface sterilized belowground tissues.

motile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Salinicola*
	Species	**Salinicola halophyticus**
	Full Scientific Name (LPSN)	Salinicola halophyticus Fidalgo et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.969

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67772]	minimum	4 °C
[Ref.: #67772]	optimum	25 °C
[Ref.: #67772]	maximum	40 °C

		pH
[Ref.: #67772]	maximum	10.0
[Ref.: #67772]	minimum	5.0
[Ref.: #67772]	optimum	6.0

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67772]	Sample type/isolated from	Halimione portulacoides, surface sterilized belowground tissues
[Ref.: #67772]	Geographic location (country and/or sea, region)	Aveiro, Aveiro
[Ref.: #67772]	Country	Portugal
[Ref.: #67772]	Country ISO 3 Code	PRT
[Ref.: #67772]	Continent	Europe
[Ref.: #67772]	Geographic location	40.6582°/-8.6890°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KY999932 (>99% sequence identity) for Salinicola from Microbeatlas

Aquatic Samples	1061
Soil Samples	139
Animal Samples	434
Plant Samples	109
Total Samples	1743

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #67772]

Biosafety level

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67772]	Salinicola sp. strain CR45 16S ribosomal RNA gene, partial sequence	KY999932	1442	GenBank ENA	1978524 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salinicola halophyticus CR45	GCA_003206695	scaffold	GenBank ENA	1808881 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinicola halophyticus CR45 NCBI: GCA_003206695.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.969	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	99.01	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	81.799	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.732	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.478	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	80.007	no

Availability in culture collections External links

[Ref.: #67772]

Culture collection no.

UCCCB99, CECT 9341, LMG 30105

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The endosphere of the salt marsh plant Halimione portulacoides is a diversity hotspot for the genus Salinicola: description of five novel species Salinicola halimionae sp. nov., Salinicola aestuarinus sp. nov., Salinicola endophyticus sp. nov., Salinicola halophyticus sp. nov. and Salinicola lusitanus sp. nov.	Fidalgo C, Proenca DN, Morais PV, Henriques I, Alves A	Int J Syst Evol Microbiol	10.1099/ijsem.0.003061	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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