Strain identifier
BacDive ID: 166093
Type strain: 
Species: Salinicola halophyticus
Strain Designation: CR45
Strain history: Fidalgo C. University of Aveiro
NCBI tax ID(s): 1808881 (species)
version 9.3 (current version)
General
@ref: 67772
BacDive-ID: 166093
keywords: genome sequence, 16S sequence, Bacteria, psychrophilic, Gram-negative
description: Salinicola halophyticus CR45 is a psychrophilic, Gram-negative bacterium that was isolated from Halimione portulacoides, surface sterilized belowground tissues.
NCBI tax id
- NCBI tax id: 1808881
- Matching level: species
strain history
- @ref: 67772
- history: Fidalgo C. University of Aveiro
doi: 10.13145/bacdive166093.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Salinicola
- species: Salinicola halophyticus
- full scientific name: Salinicola halophyticus Fidalgo et al. 2019
@ref: 67772
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Salinicola
species: Salinicola halophyticus
full scientific name: Salinicola halophyticus Fidalgo et al. 2019
strain designation: CR45
type strain: yes
Morphology
cell morphology
- @ref: 125438
- gram stain: negative
- confidence: 99.969
Culture and growth conditions
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 67772 | positive | minimum | 4 |
| 67772 | positive | optimum | 25 |
| 67772 | positive | maximum | 40 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 67772 | positive | maximum | 10.0 | alkaliphile |
| 67772 | positive | optimum | 6.0 | |
| 67772 | positive | minimum | 5.0 |
Isolation, sampling and environmental information
isolation
- @ref: 67772
- sample type: Halimione portulacoides, surface sterilized belowground tissues
- geographic location: Aveiro, Aveiro
- country: Portugal
- origin.country: PRT
- continent: Europe
- latitude: 40.6582
- longitude: -8.68905
taxonmaps
- @ref: 69479
- File name: preview.99_6236.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_2686;97_3652;98_4620;99_6236&stattab=map
- Last taxonomy: Salinicola
- 16S sequence: KY999932
- Sequence Identity:
- Total samples: 1743
- soil counts: 139
- aquatic counts: 1061
- animal counts: 434
- plant counts: 109
Safety information
risk assessment
- @ref: 67772
- biosafety level: 1
Sequence information
16S sequences
- @ref: 67772
- description: Salinicola sp. strain CR45 16S ribosomal RNA gene, partial sequence
- accession: KY999932
- length: 1442
- database: nuccore
- NCBI tax ID: 1978524
Genome sequences
- @ref: 66792
- description: Salinicola halophyticus CR45
- accession: GCA_003206695
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1808881
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99.969 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 99.01 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 81.799 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.732 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98.478 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 80.007 | no |
External links
@ref: 67772
culture collection no.: UCCCB99, CECT 9341, LMG 30105
literature
- topic: Phylogeny
- Pubmed-ID: 30418109
- title: The endosphere of the salt marsh plant Halimione portulacoides is a diversity hotspot for the genus Salinicola: description of five novel species Salinicola halimionae sp. nov., Salinicola aestuarinus sp. nov., Salinicola endophyticus sp. nov., Salinicola halophyticus sp. nov. and Salinicola lusitanus sp. nov.
- authors: Fidalgo C, Proenca DN, Morais PV, Henriques I, Alves A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003061
- year: 2018
- mesh: Bacterial Typing Techniques, Base Composition, Chenopodiaceae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Halomonadaceae/*classification/isolation & purification, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants/microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, *Wetlands
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67772 | Curators of the UCCCB | https://ucccb.uc.pt/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |