Salinicola endophyticus (UCCCB98, CECT 9340, LMG 30109)

Name: Salinicola endophyticus (UCCCB98, CECT 9340, LMG 30109)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 166092

Type strain

Strain Designation CPA92

Culture col. no. UCCCB98 CECT 9340 LMG 30109 CPA92

NCBI tax ID(s) 1949083

Special Collections UCCCB

History Fidalgo C. University of Aveiro

Links

Salinicola endophyticus CPA92 is a psychrophilic prokaryote that was isolated from Halimione portulacoides, surface sterilized belowground tissues.

psychrophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 272196

LMG 30109,CECT 9340

@ref 20215

Last LPSN update 2026-02-09 11:40:15

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Salinicola

Species Salinicola endophyticus

Full scientific name Salinicola endophyticus Fidalgo et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.4
125439		91.2
125438	negative	100

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67772	positive	minimum	4	psychrophilic
67772	positive	optimum	30	mesophilic
67772	positive	maximum	45	thermophilic

Culture pH

@ref	Ability	Type	PH	PH range
67772	positive	maximum	10.0	alkaliphile
67772	positive	minimum	4.0	acidophile
67772	positive	optimum	6.0-7.0

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.1

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
67772	Halimione portulacoides, surface sterilized belowground tissues	Aveiro, Aveiro	Portugal	PRT	Europe	40.6582	-8.68905 40.6582/-8.68905

Taxonmaps

69479

Global distribution of 16S sequence KY999931 (>99% sequence identity) for Salinicola from Microbeatlas

Aquatic Samples	162
Soil Samples	113
Animal Samples	162
Plant Samples	26
Total Samples	463

Interaction and safety

Risk assessment

67772

Biosafety level1

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM320657v1 assembly for Salinicola endophyticus CPA92	scaffold	GCA_003206575	1949083.3	2882436180	1949083	73.23

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67772	Salinicola endophyticus strain CPA92 16S ribosomal RNA gene, partial sequence	KY999931	1441		1949083

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salinicola endophyticus CPA92
NCBI: GCA_003206575

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.10	no
125439	motility	BacteriaNetⓘ	yes	91.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	78.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salinicola endophyticus CPA92
NCBI: GCA_003206575.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	97.85	no
125438	aerobic	aerobicⓘ	yes	80.55	no
125438	spore-forming	spore-formingⓘ	no	88.29	no
125438	thermophilic	thermophileⓘ	no	97.28	yes
125438	flagellated	motile2+ⓘ	yes	80.05	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The endosphere of the salt marsh plant Halimione portulacoides is a diversity hotspot for the genus Salinicola: description of five novel species Salinicola halimionae sp. nov., Salinicola aestuarinus sp. nov., Salinicola endophyticus sp. nov., Salinicola halophyticus sp. nov. and Salinicola lusitanus sp. nov.	Fidalgo C, Proenca DN, Morais PV, Henriques I, Alves A	Int J Syst Evol Microbiol	10.1099/ijsem.0.003061	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salinicola endophyticus (UCCCB98, CECT 9340, LMG 30109)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003206575

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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