Salinicola lusitanus (UCCCB100, CECT 9342, LMG 30106)

Name: Salinicola lusitanus (UCCCB100, CECT 9342, LMG 30106)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 166094

Type strain

Strain Designation CR50

Culture col. no. UCCCB100 CECT 9342 LMG 30106 CR50

NCBI tax ID(s) 1949085

Special Collections UCCCB

History Fidalgo C. University of Aveiro

Links

Salinicola lusitanus CR50 is a bacterium that was isolated from Halimione portulacoides, surface sterilized belowground tissues.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 267377

LMG 30106,CECT 9342

@ref 20215

Last LPSN update 2026-02-09 11:40:15

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Salinicola

Species Salinicola lusitanus

Full scientific name Salinicola lusitanus Fidalgo et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.7

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67772	positive	minimum	15
67772	positive	optimum	30
67772	positive	maximum	45

Culture pH

@ref	Ability	Type	PH	PH range
67772	positive	maximum	10.0	alkaliphile
67772	positive	minimum	4.0	acidophile
67772	positive	optimum	6.0

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		98.6

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
67772	Halimione portulacoides, surface sterilized belowground tissues	Aveiro, Aveiro	Portugal	PRT	Europe	40.6582	-8.68905 40.6582/-8.68905

Taxonmaps

69479

Global distribution of 16S sequence KY999933 (>99% sequence identity) for Salinicola from Microbeatlas

Aquatic Samples	24
Soil Samples	23
Animal Samples	8
Plant Samples	2
Total Samples	57

Interaction and safety

Risk assessment

67772

Biosafety level1

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67772	ASM320604v1 assembly for Salinicola lusitanus CR50	scaffold	GCA_003206045	1949085.3	2882432157	1949085	73.04

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67772	Salinicola lusitanus strain CR50 16S ribosomal RNA gene, partial sequence	KY999933	1441		1949085

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salinicola lusitanus CR50
NCBI: GCA_003206045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.60	no
125439	motility	BacteriaNetⓘ	yes	84.00	no
125439	gram_stain	BacteriaNetⓘ	negative	97.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	80.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The endosphere of the salt marsh plant Halimione portulacoides is a diversity hotspot for the genus Salinicola: description of five novel species Salinicola halimionae sp. nov., Salinicola aestuarinus sp. nov., Salinicola endophyticus sp. nov., Salinicola halophyticus sp. nov. and Salinicola lusitanus sp. nov.	Fidalgo C, Proenca DN, Morais PV, Henriques I, Alves A	Int J Syst Evol Microbiol	10.1099/ijsem.0.003061	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salinicola lusitanus (UCCCB100, CECT 9342, LMG 30106)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003206045

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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