Name: Salinicola lusitanus CR50
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 166094

Type strain:

Species: Salinicola lusitanus

Strain Designation: CR50

Culture col. no.: UCCCB100, CECT 9342, LMG 30106

Strain history: Fidalgo C. University of Aveiro

NCBI tax ID(s): 1949085 (species)

Special Collections

UCCCB

Section

Salinicola lusitanus CR50 is a bacterium that was isolated from Halimione portulacoides, surface sterilized belowground tissues.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Salinicola*
	Species	**Salinicola lusitanus**
	Full Scientific Name (LPSN)	Salinicola lusitanus Fidalgo et al. 2019

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67772]	minimum	15 °C
[Ref.: #67772]	optimum	30 °C
[Ref.: #67772]	maximum	45 °C

		pH
[Ref.: #67772]	maximum	10.0
[Ref.: #67772]	minimum	4.0
[Ref.: #67772]	optimum	6.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67772]	Sample type/isolated from	Halimione portulacoides, surface sterilized belowground tissues
[Ref.: #67772]	Geographic location (country and/or sea, region)	Aveiro, Aveiro
[Ref.: #67772]	Country	Portugal
[Ref.: #67772]	Country ISO 3 Code	PRT
[Ref.: #67772]	Continent	Europe
[Ref.: #67772]	Geographic location	40.6582°/-8.6890°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KY999933 (>99% sequence identity) for Salinicola from Microbeatlas

Aquatic Samples	24
Soil Samples	23
Animal Samples	8
Plant Samples	2
Total Samples	57

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #67772]

Biosafety level

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67772]	Salinicola lusitanus strain CR50 16S ribosomal RNA gene, partial sequence	KY999933	1441	GenBank ENA	1949085 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67772]	Salinicola lusitanus CR50	GCA_003206045	scaffold	GenBank ENA	1949085 tax ID
[Ref.: #66792]	Salinicola lusitanus CR50	2882432157	draft	JGI IMG/M	1949085 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salinicola lusitanus CR50 NCBI: GCA_003206045.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

Availability in culture collections External links

[Ref.: #67772]

Culture collection no.

UCCCB100, CECT 9342, LMG 30106

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The endosphere of the salt marsh plant Halimione portulacoides is a diversity hotspot for the genus Salinicola: description of five novel species Salinicola halimionae sp. nov., Salinicola aestuarinus sp. nov., Salinicola endophyticus sp. nov., Salinicola halophyticus sp. nov. and Salinicola lusitanus sp. nov.	Fidalgo C, Proenca DN, Morais PV, Henriques I, Alves A	Int J Syst Evol Microbiol	10.1099/ijsem.0.003061	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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