Strain identifier
BacDive ID: 166094
Type strain: 
Species: Salinicola lusitanus
Strain Designation: CR50
Strain history: Fidalgo C. University of Aveiro
NCBI tax ID(s): 1949085 (species)
version 9.1 (current version)
General
@ref: 67772
BacDive-ID: 166094
keywords: genome sequence, 16S sequence, Bacteria
description: Salinicola lusitanus CR50 is a bacterium that was isolated from Halimione portulacoides, surface sterilized belowground tissues.
NCBI tax id
- NCBI tax id: 1949085
- Matching level: species
strain history
- @ref: 67772
- history: Fidalgo C. University of Aveiro
doi: 10.13145/bacdive166094.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Salinicola
- species: Salinicola lusitanus
- full scientific name: Salinicola lusitanus Fidalgo et al. 2019
@ref: 67772
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Salinicola
species: Salinicola lusitanus
full scientific name: Salinicola lusitanus Fidalgo et al. 2019
strain designation: CR50
type strain: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 67772 | positive | minimum | 15 |
| 67772 | positive | optimum | 30 |
| 67772 | positive | maximum | 45 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 67772 | positive | maximum | 10.0 | alkaliphile |
| 67772 | positive | optimum | 6.0 | |
| 67772 | positive | minimum | 4.0 | acidophile |
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 67772
- sample type: Halimione portulacoides, surface sterilized belowground tissues
- geographic location: Aveiro, Aveiro
- country: Portugal
- origin.country: PRT
- continent: Europe
- latitude: 40.6582
- longitude: -8.68905
taxonmaps
- @ref: 69479
- File name: preview.99_79543.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_2686;97_3652;98_4620;99_79543&stattab=map
- Last taxonomy: Salinicola
- 16S sequence: KY999933
- Sequence Identity:
- Total samples: 57
- soil counts: 23
- aquatic counts: 24
- animal counts: 8
- plant counts: 2
Safety information
risk assessment
- @ref: 67772
- biosafety level: 1
Sequence information
16S sequences
- @ref: 67772
- description: Salinicola lusitanus strain CR50 16S ribosomal RNA gene, partial sequence
- accession: KY999933
- length: 1441
- database: nuccore
- NCBI tax ID: 1949085
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Salinicola lusitanus CR50 | 2882432157 | draft | img | 1949085 |
| 67772 | Salinicola lusitanus CR50 | GCA_003206045 | scaffold | ncbi | 1949085 |
Genome-based predictions
predictions
- @ref: 69481
- trait: spore-forming
- model: spore-forming
- description: Ability to form endo- or exospores
- prediction: no
- confidence: 100
- training_data: no
External links
@ref: 67772
culture collection no.: UCCCB100, CECT 9342, LMG 30106
literature
- topic: Phylogeny
- Pubmed-ID: 30418109
- title: The endosphere of the salt marsh plant Halimione portulacoides is a diversity hotspot for the genus Salinicola: description of five novel species Salinicola halimionae sp. nov., Salinicola aestuarinus sp. nov., Salinicola endophyticus sp. nov., Salinicola halophyticus sp. nov. and Salinicola lusitanus sp. nov.
- authors: Fidalgo C, Proenca DN, Morais PV, Henriques I, Alves A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003061
- year: 2018
- mesh: Bacterial Typing Techniques, Base Composition, Chenopodiaceae/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Halomonadaceae/*classification/isolation & purification, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants/microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, *Wetlands
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67772 | Curators of the UCCCB | https://ucccb.uc.pt/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |